umiAnalyzer: Tools for Analyzing Sequencing Data with Unique Molecular Identifiers
Tools for analyzing sequencing data containing unique molecular identifiers generated by 'UMIErrorCorrect' (<https://github.com/stahlberggroup/umierrorcorrect>).
| Version: | 1.0.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | BiocManager, dplyr (≥ 0.7.5), DT (≥ 0.19), forcats (≥ 0.5.0), ggplot2 (≥ 2.2.1), graphics, grDevices, gridExtra (≥ 2.3), magrittr (≥ 1.5), methods, pheatmap (≥ 1.0.12), plotly (≥ 4.9.2.1), readr (≥ 1.1.1), Rsamtools (≥ 1.32.3), scales (≥ 1.1.0), shiny (≥ 1.7.1), shinydashboard (≥ 0.7.2), shinyFiles (≥ 0.9.0), shinyWidgets (≥ 0.6.2), stats, stringr (≥ 1.4.0), tibble (≥ 1.4.2), tidyr (≥ 0.8.1), utils, viridis (≥ 0.5.1) |
| Suggests: | knitr (≥ 1.27), rmarkdown (≥ 2.1) |
| Published: | 2021-11-25 |
| DOI: | 10.32614/CRAN.package.umiAnalyzer |
| Author: | Stefan Filges 
[aut, cre],
Gustav Johansson [ctb] |
| Maintainer: | Stefan Filges <stefan.filges at gu.se> |
| BugReports: | https://github.com/sfilges/umiAnalyzer/issues |
| License: | GPL-3 |
| URL: | https://github.com/sfilges/umiAnalyzer |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | umiAnalyzer results |
Documentation:
| Reference manual: | umiAnalyzer.pdf |
| Vignettes: |
umiAnalyzer vignette |
Downloads:
| Package source: | umiAnalyzer_1.0.0.tar.gz |
| Windows binaries: | r-devel: umiAnalyzer_1.0.0.zip, r-release: umiAnalyzer_1.0.0.zip, r-oldrel: umiAnalyzer_1.0.0.zip |
| macOS binaries: | r-release (arm64): umiAnalyzer_1.0.0.tgz, r-oldrel (arm64): umiAnalyzer_1.0.0.tgz, r-release (x86_64): umiAnalyzer_1.0.0.tgz, r-oldrel (x86_64): umiAnalyzer_1.0.0.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=umiAnalyzer to link to this page.