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ume: Ultrahigh-Resolution Mass Spectrometry Data Evaluation for Complex Organic Matter

Provides tools for assigning molecular formulas from exact masses obtained by ultrahigh-resolution mass spectrometry. The methodology follows the workflow described in Leefmann et al. (2019) <doi:10.1002/rcm.8315>. The package supports the inspection, filtering and visualization of molecular formula data and includes utilities for calculating common molecular parameters (e.g., double bond equivalents, DBE). A graphical user interface is available via the 'shiny'-based 'ume' application.

Version: 1.6.1
Depends: R (≥ 4.2.0)
Imports: data.table, ggplot2, plotly, vegan, viridis, jsonlite
Suggests: rmarkdown, pander, knitr, testthat (≥ 3.0.0), xml2, pdftools
Published: 2026-05-09
DOI: 10.32614/CRAN.package.ume
Author: Boris Koch ORCID iD [aut, cre], Stephan Frickenhaus ORCID iD [ctb], Oliver Lechtenfeld ORCID iD [ctb], Tim Leefmann ORCID iD [ctb], Fabian Moye ORCID iD [ctb]
Maintainer: Boris Koch <boris.koch at awi.de>
License: MIT + file LICENSE
URL: https://gitlab.awi.de/bkoch/ume, https://ume.awi.de/, https://www.awi.de/en/ume
NeedsCompilation: no
Citation: ume citation info
Materials: README, NEWS
CRAN checks: ume results

Documentation:

Reference manual: ume.html , ume.pdf
Vignettes: ume (source, R code)

Downloads:

Package source: ume_1.6.1.tar.gz
Windows binaries: r-devel: ume_1.6.1.zip, r-release: ume_1.6.1.zip, r-oldrel: ume_1.5.2.zip
macOS binaries: r-release (arm64): ume_1.6.1.tgz, r-oldrel (arm64): ume_1.6.1.tgz, r-release (x86_64): ume_1.6.1.tgz, r-oldrel (x86_64): ume_1.6.1.tgz
Old sources: ume archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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