treesliceR: To Slice Phylogenetic Trees and Infer Evolutionary Patterns Over Time

Provide a range of functions with multiple criteria for cutting phylogenetic trees at any evolutionary depth. It enables users to cut trees in any orientation, such as rootwardly (from root to tips) and tipwardly (from tips to its root), or allows users to define a specific time interval of interest. It can also be used to create multiple tree pieces of equal temporal width. Moreover, it allows the assessment of novel temporal rates for various phylogenetic indexes, which can be quickly displayed graphically.

Version:	1.0.2
Depends:	R (≥ 2.10)
Imports:	ape (≥ 5.7-1), doParallel (≥ 1.0.17), foreach (≥ 1.5.2), ggplot2 (≥ 3.4.2), sf (≥ 1.0-9)
Suggests:	devtools, ggpubr (≥ 0.6.0), knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2024-08-23
DOI:	10.32614/CRAN.package.treesliceR
Author:	Matheus Lima Araujo [aut, cre, cph], Luiz Gabriel Souza e Souza Ferreira [aut], Gabriel Nakamura [aut], Marco Tulio Pacheco Coelho [aut], Thiago Fernando Rangel [aut]
Maintainer:	Matheus Lima Araujo <matheusaraujolima at live.com>
BugReports:	https://github.com/AraujoMat/treesliceR/issues
License:	MIT + file LICENSE
URL:	https://github.com/AraujoMat/treesliceR, https://araujomat.github.io/treesliceR/
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	treesliceR results

Documentation:

Reference manual:	treesliceR.pdf
Vignettes:	Introduction to treesliceR (source, R code) Passerines Distribution (source, R code) Passerines Diversification (source, R code)

Downloads:

Package source:	treesliceR_1.0.2.tar.gz
Windows binaries:	r-devel: treesliceR_1.0.2.zip, r-release: treesliceR_1.0.2.zip, r-oldrel: treesliceR_1.0.2.zip
macOS binaries:	r-release (arm64): treesliceR_1.0.2.tgz, r-oldrel (arm64): treesliceR_1.0.2.tgz, r-release (x86_64): treesliceR_1.0.2.tgz, r-oldrel (x86_64): treesliceR_1.0.2.tgz
Old sources:	treesliceR archive

Linking:

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