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The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.
Version: | 1.1.1 |
Depends: | R (≥ 4.1.0) |
Imports: | glue, dplyr, stats, rlang, ggrepel, ggplot2 |
Suggests: | rmarkdown, knitr |
Published: | 2023-08-21 |
DOI: | 10.32614/CRAN.package.tidyestimate |
Author: | Kai Aragaki |
Maintainer: | Kai Aragaki <aaragak1 at jhmi.edu> |
BugReports: | https://github.com/KaiAragaki/tidyestimate/issues |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
Copyright: | see file COPYRIGHTS |
URL: | https://github.com/KaiAragaki/tidyestimate |
NeedsCompilation: | no |
Materials: | README NEWS |
In views: | Omics |
CRAN checks: | tidyestimate results |
Reference manual: | tidyestimate.pdf |
Vignettes: |
Using tidyestimate |
Package source: | tidyestimate_1.1.1.tar.gz |
Windows binaries: | r-devel: tidyestimate_1.1.1.zip, r-release: tidyestimate_1.1.1.zip, r-oldrel: tidyestimate_1.1.1.zip |
macOS binaries: | r-release (arm64): tidyestimate_1.1.1.tgz, r-oldrel (arm64): tidyestimate_1.1.1.tgz, r-release (x86_64): tidyestimate_1.1.1.tgz, r-oldrel (x86_64): tidyestimate_1.1.1.tgz |
Old sources: | tidyestimate archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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