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tidyestimate: A Tidy Implementation of 'ESTIMATE'
The 'ESTIMATE' package infers tumor purity from expression data as a
function of immune and stromal infiltrate, but requires writing of intermediate
files, is un-pipeable, and performs poorly when presented with modern datasets
with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of
'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.
| Version: |
1.1.1 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
glue, dplyr, stats, rlang, ggrepel, ggplot2 |
| Suggests: |
rmarkdown, knitr |
| Published: |
2023-08-21 |
| DOI: |
10.32614/CRAN.package.tidyestimate |
| Author: |
Kai Aragaki  [aut,
cre],
Paul Roebuck [cph] (Copyright holder of ESTIMATE package),
Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm),
Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm),
Hoon Kim [aut] (Author of original ESTIMATE algorithm),
Roel Verhaak [aut] (Author of original ESTIMATE algorithm) |
| Maintainer: |
Kai Aragaki <aaragak1 at jhmi.edu> |
| BugReports: |
https://github.com/KaiAragaki/tidyestimate/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: |
see file COPYRIGHTS |
| URL: |
https://github.com/KaiAragaki/tidyestimate |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| In views: |
Omics |
| CRAN checks: |
tidyestimate results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=tidyestimate
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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