The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Fits time trend models for routine disease surveillance tasks and returns probability distributions for a variety of quantities of interest, including age-standardized rates, period and cumulative percent change, and measures of health inequality. The models are appropriate for count data such as disease incidence and mortality data, employing a Poisson or binomial likelihood and the first-difference (random-walk) prior for unknown risk. Optionally add a covariance matrix for multiple, correlated time series models. Inference is completed using Markov chain Monte Carlo via the Stan modeling language. References: Donegan, Hughes, and Lee (2022) <doi:10.2196/34589>; Stan Development Team (2021) <https://mc-stan.org>; Theil (1972, ISBN:0-444-10378-3).
Version: | 0.3.0 |
Depends: | R (≥ 3.5.0) |
Imports: | rstantools (≥ 2.1.1), methods, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.26.0), tidybayes (≥ 3.0.0), dplyr (≥ 1.0.7), rlang (≥ 0.4.0), tidyr (≥ 1.1.0), ggplot2 (≥ 3.0.0), gridExtra (≥ 2.0), scales (≥ 0.4.0), ggdist (≥ 3.0.0) |
LinkingTo: | BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.26.0), StanHeaders (≥ 2.26.0) |
Suggests: | rmarkdown, knitr, testthat |
Published: | 2024-07-08 |
DOI: | 10.32614/CRAN.package.surveil |
Author: | Connor Donegan |
Maintainer: | Connor Donegan <connor.donegan at gmail.com> |
License: | GPL (≥ 3) |
URL: | https://connordonegan.github.io/surveil/, https://github.com/ConnorDonegan/surveil/ |
NeedsCompilation: | yes |
SystemRequirements: | GNU make |
Citation: | surveil citation info |
Materials: | README NEWS |
CRAN checks: | surveil results |
Reference manual: | surveil.pdf |
Vignettes: |
Age-standardized rates Measuring health inequality Using surveil for public health research MCMC with surveil |
Package source: | surveil_0.3.0.tar.gz |
Windows binaries: | r-devel: surveil_0.3.0.zip, r-release: surveil_0.3.0.zip, r-oldrel: surveil_0.3.0.zip |
macOS binaries: | r-release (arm64): surveil_0.3.0.tgz, r-oldrel (arm64): surveil_0.3.0.tgz, r-release (x86_64): surveil_0.3.0.tgz, r-oldrel (x86_64): surveil_0.3.0.tgz |
Old sources: | surveil archive |
Please use the canonical form https://CRAN.R-project.org/package=surveil to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.