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A method that inherits the standard gene set variation analysis (GSVA) method and also provides the option to use summary statistics from any analysis (disease vs healthy, lesional side vs nonlesional side, etc..) input to define the direction of gene sets used for directional gene set score calculation for a given disease. Note to use this package, GSVA(>= 1.52.1) is needed to pre-installed. Hanzelmann, S., Castelo, R., and Guinney, J. (2013) <doi:10.1186/1471-2105-14-7>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | GSVA, dplyr, purrr, stringr, tibble, vctrs, stats, tidyselect, utils, clusterProfiler, org.Hs.eg.db |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-07-26 |
| DOI: | 10.32614/CRAN.package.ssdGSA |
| Author: | Xingpeng Li [aut, cre], Qi Qian [aut] |
| Maintainer: | Xingpeng Li <xingpeng.li at pfizer.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| CRAN checks: | ssdGSA results |
| Reference manual: | ssdGSA.pdf |
| Vignettes: |
ssdGSA |
| Package source: | ssdGSA_0.1.1.tar.gz |
| Windows binaries: | r-devel: ssdGSA_0.1.1.zip, r-release: ssdGSA_0.1.1.zip, r-oldrel: ssdGSA_0.1.1.zip |
| macOS binaries: | r-release (arm64): ssdGSA_0.1.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): ssdGSA_0.1.1.tgz, r-oldrel (x86_64): not available |
| Old sources: | ssdGSA archive |
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