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spatialTIME: Spatial Analysis of Vectra Immunoflourescent Data

Visualization and analysis of Vectra Immunoflourescent data. Options for calculating both the univariate and bivariate Ripley's K are included. Calculations are performed using a permutation-based approach presented by Wilson et al. <doi:10.1101/2021.04.27.21256104>.

Version: 1.3.4-5
Depends: R (≥ 2.10)
Imports: magrittr, dplyr, tidyr, ggplot2, scales, grDevices, purrr, spatstat.univar, spatstat.geom, spatstat.explore, RColorBrewer, furrr, future, tidyselect, crayon, pbmcapply, dixon, tibble, stringr
Suggests: knitr, devtools, rmarkdown, testthat (≥ 3.0.0), gridExtra, pheatmap
Published: 2024-06-04
DOI: 10.32614/CRAN.package.spatialTIME
Author: Jordan Creed [aut], Ram Thapa [aut], Christopher Wilson [aut], Alex Soupir [aut], Oscar Ospina [aut], Julia Wrobel [aut], Brooke Fridley [cph], Fridley Lab [cre]
Maintainer: Fridley Lab <fridley.lab at moffitt.org>
BugReports: https://github.com/FridleyLab/spatialTIME/issues
License: MIT + file LICENSE
URL: https://github.com/FridleyLab/spatialTIME
NeedsCompilation: no
Citation: spatialTIME citation info
Materials: README
CRAN checks: spatialTIME results

Documentation:

Reference manual: spatialTIME.pdf
Vignettes: Introduction to spatialTIME

Downloads:

Package source: spatialTIME_1.3.4-5.tar.gz
Windows binaries: r-devel: spatialTIME_1.3.4-5.zip, r-release: spatialTIME_1.3.4-5.zip, r-oldrel: spatialTIME_1.3.4-5.zip
macOS binaries: r-release (arm64): spatialTIME_1.3.4-5.tgz, r-oldrel (arm64): spatialTIME_1.3.4-5.tgz, r-release (x86_64): spatialTIME_1.3.4-5.tgz, r-oldrel (x86_64): spatialTIME_1.3.4-5.tgz
Old sources: spatialTIME archive

Reverse dependencies:

Reverse suggests: mxfda, scSpatialSIM

Linking:

Please use the canonical form https://CRAN.R-project.org/package=spatialTIME to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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