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spatialGE 1.2.2

spatialGE 1.2.1

• Added C++ code to speed up STenrich computations (Thank you, Dr. Soupir!).
• The STenrich function can now calculate gene set enrichment scores (via GSVA) in addition to gene set average expression.
• The STenrich function can now test for gene set “hot-spots” within an specific tissue domain (annot and domain arguments).
• Spatial distances can now be log-transformed for STgradient (log argument).
• Example data sets are now in the spatialGE_Data GitHub repository.
• New functions spatial_metadata and tissue_names to quickly access the names of spot/cell annotations and sample names.
• Re-assessed package dependencies.
• Use of DelayedArray for some calculations.
• Several bug fixes.

spatialGE 1.2.0

• Functions STenrich, STgradient, and STdiff available.
• Added C++ code for Seurat’s implementation of FindVariableFeatures

spatialGE 1.1.0

• Multiple, significant changes to STlist (incompatible with STlist objects from version 1.0).

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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