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spatialAtomizeR 0.2.5

Major Changes

• Fixed print() statement in prepare_nimble_inputs() that caused debug output ([1] "\nCreating...") to appear in console
• Marked 14 internal helper functions as @keywords internal to prevent export:
  • NIMBLE distribution functions: biasedUrn_rmfnc, dmfnchypg, Rmfnchypg, rmfnchypg, register_nimble_distributions
  • Diagnostic functions: check_mcmc_diagnostics, create_diagnostic_plots, print_convergence_summary, create_comparison_plots, create_summary_statistics, create_sensitivity_summary_plots
  • Preparation functions: prepare_spatial_bookkeeping, prepare_adjacency_matrices, prepare_nimble_inputs

Documentation

• Major vignette overhaul - Fixed critical errors and improved usability:
  • Removed non-existent parameters (res1, res2) from simulate_misaligned_data() examples
  • Corrected run_abrm() function signature (now uses gridx, gridy, atoms instead of sim_data)
  • Removed “Advanced” section showing internal functions
  • Added Example 1: Complete simulated data workflow with S3 method demonstrations
  • Added Example 2: Real-world Utah counties and school districts analysis (matches manuscript)
  • Enhanced troubleshooting section with common errors and solutions
• Improved summary.abrm() output formatting (cleaner column names, removed redundancy)
• All vignette code examples now tested and verified to run without errors

spatialAtomizeR 0.2.4

Major Changes

• Refactored NIMBLE model architecture: Custom distributions now defined as top-level exported functions within package namespace (addressing package environment issue from December 4, 2024 submission)
• Moved nimble from Imports to Depends: Ensures internal compilation tools are correctly available on search path without global assignments

Bug Fixes

• Fixed package environment issue that prevented proper NIMBLE model compilation

Notes

• NIMBLE custom distributions (dmfnchypg, rmfnchypg, Rmfnchypg) now properly registered and accessible

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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