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snvecR

DOI CRAN status GPL-3 release R-CMD-check Launch binder

Easily calculate precession and obliquity from an astronomical solution (AS, defaults to ZB18a from Zeebe and Lourens (2019)) and assumed or reconstructed values for tidal dissipation (Td) and dynamical ellipticity (Ed). This is a translation and adaptation of the C-code in the supplementary material to Zeebe and Lourens (2022), with further details on the methodology described in Zeebe (2022). The name of the C-routine is snvec, which refers to the key units of computation: spin vector s and orbit normal vector n.

Installation

You can install snvecR like so:

install.packages("snvecR")

To use the development version of the package, use:

remotes::install_github("japhir/snvecR")

Example

Here’s the main function that does the work in action:

library(snvecR)
solution <- snvec(tend = -1000, # final timestep in kyr
                  ed = 1, # dynamical ellipticity, normalized to modern
                  td = 0, # tidal dissipation, normalized to modern
                  astronomical_solution = "full-ZB18a", # see ?full_ZB18a for details
                  tres = -0.4 # timestep resolution in kyr (so this is 400 years)
                  )
#> ℹ The astronomical solution "full-ZB18a" has not been downloaded.
#> ℹ Reading 'full-ZB18a.dat' from website <http://www.soest.hawaii.edu/oceanography/faculty/zeebe_files/Astro/PrecTilt/OS/ZB18a/ems-plan3.dat>.
#> ℹ Calculating helper columns.
#> ℹ The cache directory is '/home/japhir/.cache/R/snvecR'.
#> ℹ Saved 'full-ZB18a.dat' to cache.
#> ℹ Saved cleaned-up 'full-ZB18a.csv' to cache.
#> ℹ Saved astronomical solution with helper columns 'full-ZB18a.rds' to cache.
#> ℹ Future calls to `get_solution("full-ZB18a")` will read from the cache.
#> ! If you don't want this, specify `force = TRUE`.
#> This is snvecR VERSION: 3.9.2.9000 2024-04-22
#> Richard E. Zeebe
#> Ilja J. Kocken
#> 
#> Integration parameters:
#> • `tend` = -1000 kyr
#> • `ed` = 1
#> • `td` = 0
#> • `astronomical_solution` = "full-ZB18a"
#> • `os_ref_frame` = "HCI"
#> • `os_omt` = defaulting to 75.594
#> • `os_inct` = defaulting to 7.155
#> • `tres` = -0.4 kyr
#> • `atol` = 1e-05
#> • `rtol` = 0
#> • `solver` = "vode"
#> ℹ started at "2024-04-22 08:47:29.732434"
#> Final values:
#> • s[1][2][3]: 0.404184487124565, -0.0537555129057148, and 0.913036138471423
#> • s-error = |s|-1: -5.51290422495798e-05
#> Final values:
#> • obliquity: 0.413060472710089 rad
#> • precession: -0.562357122261026 rad
#> ℹ stopped at "2024-04-22 08:47:34.762126"
#> ℹ total duration: 5.03

To quickly save out the results for further study to CSV1:

write.csv(solution, "ZB18a_ed-1.0_td-0.0.csv")

see ?snvec for further documentation.

Here we create a quick plot of the obliquity:

plot(epl ~ time, data = solution, type = 'l')

Or if you want to make a slightly fancier plot of the calculated climatic precession with the eccentricity envelope:

library(ggplot2)
solution |>
  ggplot(aes(x = time, y = cp)) +
  labs(x = "Time (kyr)", y = "(-)", colour = "Orbital Element") +
  # plot climatic precession
  geom_line(aes(colour = "Climatic Precession")) +
  # add the eccentricity envelope
  geom_line(aes(y = ee, colour = "Eccentricity"),
            data = get_solution() |> dplyr::filter(time > -1000)) +
  scale_color_discrete(type = c("skyblue", "black")) +
  theme(legend.position = "inside", legend.position.inside = c(.9, .95))

References

Zeebe, R. E., & Lourens, L. J. (2019). Solar System chaos and the Paleocene–Eocene boundary age constrained by geology and astronomy. Science, 365(6456), 926–929. doi:10.1126/science.aax0612.

Zeebe, R. E., & Lourens, L. J. (2022). A deep-time dating tool for paleo-applications utilizing obliquity and precession cycles: The role of dynamical ellipticity and tidal dissipation. Paleoceanography and Paleoclimatology, e2021PA004349. doi:10.1029/2021PA004349.

Zeebe, R. E. (2022). Reduced Variations in Earth’s and Mars’ Orbital Inclination and Earth’s Obliquity from 58 to 48 Myr ago due to Solar System Chaos. The Astronomical Journal, 164(3), doi:10.3847/1538-3881/ac80f8.

Wikipedia page on Orbital Elements: https://en.wikipedia.org/wiki/Orbital_elements

  1. Actually I would recommend the readr package with readr::write_csv() instead.↩

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