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Population genetics package for designing diagnostic panels. Candidate markers, marker combinations, and different panel sizes are assessed for how well they can predict the source population of known samples. Requires a genotype file of candidate markers in STRUCTURE format. Methods for population cross-validation are described in Jombart (2008) <doi:10.1093/bioinformatics/btn129>.
Version: | 2.1.1 |
Depends: | R (≥ 2.10) |
Imports: | adegenet, doParallel, dplyr, forcats, foreach, ggplot2, graphics, magrittr, parallel, readr, tidyr, utils, withr, yaml |
Suggests: | testthat (≥ 3.0.0) |
Published: | 2024-02-20 |
DOI: | 10.32614/CRAN.package.snpAIMeR |
Author: | Kim Vertacnik |
Maintainer: | Kim Vertacnik <kim.vertacnik at mailbox.org> |
Contact: | Kim Vertacnik <kim.vertacnik@mailbox.org> or Julian Dupuis <julian.dupuis@uky.edu> |
License: | MIT + file LICENSE |
URL: | https://github.com/OksanaVe/snpAIMeR |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | snpAIMeR results |
Reference manual: | snpAIMeR.pdf |
Package source: | snpAIMeR_2.1.1.tar.gz |
Windows binaries: | r-devel: snpAIMeR_2.1.1.zip, r-release: snpAIMeR_2.1.1.zip, r-oldrel: snpAIMeR_2.1.1.zip |
macOS binaries: | r-release (arm64): snpAIMeR_2.1.1.tgz, r-oldrel (arm64): snpAIMeR_2.1.1.tgz, r-release (x86_64): snpAIMeR_2.1.1.tgz, r-oldrel (x86_64): snpAIMeR_2.1.1.tgz |
Old sources: | snpAIMeR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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