slouch: Stochastic Linear Ornstein-Uhlenbeck Comparative Hypotheses

An implementation of a phylogenetic comparative method. It can fit univariate among-species Ornstein-Uhlenbeck models of phenotypic trait evolution, where the trait evolves towards a primary optimum. The optimum can be modelled as a single parameter, as multiple discrete regimes on the phylogenetic tree, and/or with continuous covariates. See also Hansen (1997) <doi:10.2307/2411186>, Butler & King (2004) <doi:10.1086/426002>, Hansen et al. (2008) <doi:10.1111/j.1558-5646.2008.00412.x>.

Version:	2.1.5
Depends:	R (≥ 3.0.0), base, stats
Imports:	crayon, parallel, ape, memoise
Suggests:	knitr, rmarkdown, bookdown, testthat
Published:	2024-02-15
DOI:	10.32614/CRAN.package.slouch
Author:	Bjørn Tore Kopperud [aut, cre], Jason Pienaar [aut], Kjetil Lysne Voje [aut], Steven Hecht Orzack [aut], Thomas F. Hansen [aut], Mark Grabowski [ctb]
Maintainer:	Bjørn Tore Kopperud <kopperud at protonmail.com>
BugReports:	https://github.com/kopperud/slouch/issues
License:	GPL-2
URL:	https://github.com/kopperud/slouch
NeedsCompilation:	no
Materials:	NEWS
In views:	Phylogenetics
CRAN checks:	slouch results

Documentation:

Reference manual:	slouch.pdf
Vignettes:	Examples

Downloads:

Package source:	slouch_2.1.5.tar.gz
Windows binaries:	r-devel: slouch_2.1.5.zip, r-release: slouch_2.1.5.zip, r-oldrel: slouch_2.1.5.zip
macOS binaries:	r-release (arm64): slouch_2.1.5.tgz, r-oldrel (arm64): slouch_2.1.5.tgz, r-release (x86_64): slouch_2.1.5.tgz, r-oldrel (x86_64): slouch_2.1.5.tgz
Old sources:	slouch archive

Reverse dependencies:

Reverse imports:

ctpm

Linking:

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