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sitrep: Report Templates and Helper Functions for Applied Epidemiology

A meta-package that loads the complete sitrep ecosystem for applied epidemiology analysis. This package provides report templates and automatically loads companion packages, including 'epitabulate' (for epidemiological tables), 'epidict' (for data dictionaries), 'epikit' (for epidemiological utilities), and 'apyramid' (for age-sex pyramids). Simply load 'sitrep' to access all functions from the ecosystem.

Version: 0.2.3
Depends: R (≥ 3.2)
Imports: apyramid (≥ 0.1.0), epidict (≥ 0.1.0), epikit, epitabulate (≥ 0.1.0), utils
Suggests: anthro, binom, broom, clipr, covr, dplyr (≥ 0.8.0), flextable, forcats, ggalluvial, ggplot2 (≥ 3.0.0), ggspatial, glue, gtsummary (≥ 2.0.0), here, janitor, knitr, labelled, lubridate, matchmaker, pacman, parsedate, patchwork, purrr, rio, rlang (≥ 0.4.0), rmarkdown, scales, sessioninfo, sf, slider, srvyr, stats, stringr, summarytools, survey, testthat (≥ 2.1.0), tibble, tidyr (≥ 1.0.0), tidyselect, tsibble, vdiffr
Published: 2025-12-22
DOI: 10.32614/CRAN.package.sitrep
Author: Alexander Spina ORCID iD [aut, cre], Zhian N. Kamvar ORCID iD [aut], Dirk Schumacher [aut], Kate Doyle [aut], Chris Jarvis [aut], Lukas Richter [aut], Paula Blomquist [aut], Annick Lenglet [ctb], Neale Batra [ctb], Applied Epi Incorporated [cph], Medecins Sans Frontieres Operational Centre Amsterdam [fnd]
Maintainer: Alexander Spina <aspina at appliedepi.org>
BugReports: https://github.com/R4EPI/sitrep/issues/
License: GPL-3
URL: https://github.com/R4EPI/sitrep/, https://r4epi.github.io/sitrep/
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: sitrep results

Documentation:

Reference manual: sitrep.html , sitrep.pdf
Vignettes: Origin Story (source, R code)
Guide: AJS outbreak report (source)
Guide: Cholera outbreak report (source)
Guide: Diphtheria outbreak report (source)
Intersectional Outbreak Recode Guide (source, R code)
Guide: Measles outbreak report (source)
Guide: Meningitis outbreak report (source)

Downloads:

Package source: sitrep_0.2.3.tar.gz
Windows binaries: r-devel: sitrep_0.2.3.zip, r-release: sitrep_0.2.3.zip, r-oldrel: sitrep_0.2.3.zip
macOS binaries: r-release (arm64): sitrep_0.2.3.tgz, r-oldrel (arm64): sitrep_0.2.3.tgz, r-release (x86_64): sitrep_0.2.3.tgz, r-oldrel (x86_64): sitrep_0.2.3.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=sitrep to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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