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match.arg() calls in sim_do_pedigree() and sim_dof1_pedigree().Added dataset, mouseL_cox and mouseL_mgi, with mouse chromosome lengths in cM.
collapse_do_alleles() now removes any redudant crossovers (adjacent alleles that are the same.
In C++, avoid calling runif() with n=0, and require Rcpp 0.12.17 (regarding handling of random number generation)
Byte-compile the R code
Added palette argument to CCcolors(). Default is to return my revised CC colors. CCcolors("orig") gives the original, official colors.
The chrlength argument for plot_ind() can be a vector of length 2, in which case the two chromosomes will be different lengths but aligned at the top. This is to allow illustratation of the X and Y chromosomes in males.
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