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seqmagick 0.1.9

• fa_summary() to summarize sequences (count, length range, GC content and ambiguous character proportion) (2026-08-27, Thu)
• fa_read() and fa_write() support compressed files (.gz, .bz2, .xz) transparently (2026-08-27, Thu)
• add testthat test suite covering reading/writing, format conversions, renaming and summaries (2026-08-27, Thu)
• remove ‘magrittr’ dependency, use base pipe (|>) (2026-08-27, Thu)
• bs_rename() and fa_rename() default to sep=NULL and position=NULL; unmatched names are kept unchanged (2026-08-27, Thu)
• bug fix: keep original names for unmatched entries when both sep and position are set (2026-08-27, Thu)

seqmagick 0.1.8

• ncbi_fa_read() to download FASTA sequences by accession number and read them as sequence objects (2026-01-31, Sat)

seqmagick 0.1.7

• clw_read() and sth_read() to parse CLUSTAL and STOCKHOLM outputs (2023-12-19, Tue)
• mega_read() to parse various file types of MEGA sequence alignment (2023-12-18, Mon)

seqmagick 0.1.6

• gb_read() to parse ‘GenBank’ file (2023-06-27, Tue)

seqmagick 0.1.2

• move muscle, GenomicAlignments, GenomicRanges, IRanges and Rsamtools from Imports to Suggests (2019-12-18, Wed)

seqmagick 0.1.1

• cran initial release (2019-12-17, Tue)

seqmagick 0.0.9

• add examples to function documentation (2019-12-11, Wed)
• change default type="auto" for fa_read (2019-12-09, Mon)

seqmagick 0.0.8

• submit to CRAN (2019-12-03, Tue)

seqmagick 0.0.7

• bam2DNAStringSet function (2016-12-28, Wed)

seqmagick 0.0.6

• fix phy_read bug for sequential format (2016-12-14, Wed)

seqmagick 0.0.5

• replaceInside (2016-09-26, Mon)
• download_genbank to download sequences from GenBank by accession number (2016-07-28, Thu)

seqmagick 0.0.4

• fa_rename & bs_rename (2016-07-22, Fri)

seqmagick 0.0.3

• phy_write, phy_read, fas2phy, phy2fas (2016-06-28, Tue)

seqmagick 0.0.2

• add vignette (2016-06-20, Mon)
• bs_aln: sequence alignment (2016-06-20, Mon)
• bs_hamming: hamming distance of sequences (2016-06-15, Wed)
• bs_filter: sequence filter for BStringSet object (2016-06-15, Wed)

seqmagick 0.0.1

• fa_read: read FASTA file (2016-06-15, Wed)
• consensus: consensus sequence of aligned FASTA sequences (2016-06-15, Wed)
• fa_to_interleaved & fa_to_sequential: FASTA format conversion (2016-06-15, Wed)
• fa_combine: combine 2 FASTA files (2016-06-15, Wed)
• fa_filter: fasta filter (2016-06-09, Thu)
• fa_write: output fasta file to interleaved or sequential format (2016-06-09, Thu)

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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