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secsse: Several Examined and Concealed States-Dependent Speciation and Extinction

Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.

Version: 3.1.0
Depends: R (≥ 4.2.0)
Imports: utils, DDD (≥ 5.0), ape, geiger, Rcpp (≥ 1.0.10), RcppParallel, ggplot2, tibble, rlang, treestats
LinkingTo: Rcpp, RcppParallel, BH (≥ 1.81.0-1)
Suggests: diversitree, phytools, testthat, subplex, knitr, rmarkdown
Published: 2024-04-30
DOI: 10.32614/CRAN.package.secsse
Author: Leonel Herrera Alsina ORCID iD [aut], Paul van Els ORCID iD [aut], Thijs Janzen ORCID iD [ctb], Hanno Hildenbrandt ORCID iD [ctb], Pedro Santos Neves ORCID iD [ctb], Rampal S. Etienne ORCID iD [cre, aut]
Maintainer: Rampal S. Etienne <r.s.etienne at rug.nl>
BugReports: https://github.com/rsetienne/secsse/issues
License: GPL (≥ 3) | file LICENSE
Copyright: see file COPYRIGHTS
URL: https://rsetienne.github.io/secsse/, https://github.com/rsetienne/secsse
NeedsCompilation: yes
SystemRequirements: C++17
Citation: secsse citation info
Materials: NEWS
In views: Phylogenetics
CRAN checks: secsse results

Documentation:

Reference manual: secsse.pdf
Vignettes: Using secsse with complete phylogenies (with extinction)
Plotting probabilities
Simulating with secsse
Starting secsse

Downloads:

Package source: secsse_3.1.0.tar.gz
Windows binaries: r-devel: secsse_3.1.0.zip, r-release: secsse_3.1.0.zip, r-oldrel: secsse_3.1.0.zip
macOS binaries: r-release (arm64): secsse_3.1.0.tgz, r-oldrel (arm64): secsse_3.1.0.tgz, r-release (x86_64): secsse_3.1.0.tgz, r-oldrel (x86_64): secsse_3.1.0.tgz
Old sources: secsse archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=secsse to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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