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Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.
Version: | 3.1.0 |
Depends: | R (≥ 4.2.0) |
Imports: | utils, DDD (≥ 5.0), ape, geiger, Rcpp (≥ 1.0.10), RcppParallel, ggplot2, tibble, rlang, treestats |
LinkingTo: | Rcpp, RcppParallel, BH (≥ 1.81.0-1) |
Suggests: | diversitree, phytools, testthat, subplex, knitr, rmarkdown |
Published: | 2024-04-30 |
DOI: | 10.32614/CRAN.package.secsse |
Author: | Leonel Herrera Alsina
|
Maintainer: | Rampal S. Etienne <r.s.etienne at rug.nl> |
BugReports: | https://github.com/rsetienne/secsse/issues |
License: | GPL (≥ 3) | file LICENSE |
Copyright: | see file COPYRIGHTS |
URL: | https://rsetienne.github.io/secsse/, https://github.com/rsetienne/secsse |
NeedsCompilation: | yes |
SystemRequirements: | C++17 |
Citation: | secsse citation info |
Materials: | NEWS |
In views: | Phylogenetics |
CRAN checks: | secsse results |
Reference manual: | secsse.pdf |
Vignettes: |
Using secsse with complete phylogenies (with extinction) Plotting probabilities Simulating with secsse Starting secsse |
Package source: | secsse_3.1.0.tar.gz |
Windows binaries: | r-devel: secsse_3.1.0.zip, r-release: secsse_3.1.0.zip, r-oldrel: secsse_3.1.0.zip |
macOS binaries: | r-release (arm64): secsse_3.1.0.tgz, r-oldrel (arm64): secsse_3.1.0.tgz, r-release (x86_64): secsse_3.1.0.tgz, r-oldrel (x86_64): secsse_3.1.0.tgz |
Old sources: | secsse archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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