secsse: Several Examined and Concealed States-Dependent Speciation and Extinction
Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.
| Version: | 3.1.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | utils, DDD (≥ 5.0), ape, geiger, Rcpp (≥ 1.0.10), RcppParallel, ggplot2, tibble, rlang, treestats |
| LinkingTo: | Rcpp, RcppParallel, BH (≥ 1.81.0-1) |
| Suggests: | diversitree, phytools, testthat, subplex, knitr, rmarkdown |
| Published: | 2024-04-30 |
| DOI: | 10.32614/CRAN.package.secsse |
| Author: | Leonel Herrera Alsina
 [aut],
Paul van Els
[aut],
Thijs Janzen
[ctb],
Hanno Hildenbrandt
[ctb],
Pedro Santos Neves
[ctb],
Rampal S. Etienne
[cre, aut] |
| Maintainer: | Rampal S. Etienne <r.s.etienne at rug.nl> |
| BugReports: | https://github.com/rsetienne/secsse/issues |
| License: | GPL (≥ 3) | file LICENSE |
| Copyright: | see file COPYRIGHTS |
| URL: | https://rsetienne.github.io/secsse/, https://github.com/rsetienne/secsse |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Citation: | secsse citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | secsse results |
Documentation:
| Reference manual: | secsse.pdf |
| Vignettes: |
Using secsse with complete phylogenies (with extinction) Plotting probabilities Simulating with secsse Starting secsse |
Downloads:
| Package source: | secsse_3.1.0.tar.gz |
| Windows binaries: | r-devel: secsse_3.1.0.zip, r-release: secsse_3.1.0.zip, r-oldrel: secsse_3.1.0.zip |
| macOS binaries: | r-release (arm64): secsse_3.1.0.tgz, r-oldrel (arm64): secsse_3.1.0.tgz, r-release (x86_64): secsse_3.1.0.tgz, r-oldrel (x86_64): secsse_3.1.0.tgz |
| Old sources: | secsse archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=secsse to link to this page.