The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Generates cell-level cytokine activity estimates using relevant information from gene sets constructed with the 'CytoSig' and the 'Reactome' databases and scored using the modified 'Variance-adjusted Mahalanobis (VAM)' framework for single-cell RNA-sequencing (scRNA-seq) data. 'CytoSig' database is described in: Jiang at al., (2021) <doi:10.1038/s41592-021-01274-5>. 'Reactome' database is described in: Gillespie et al., (2021) <doi:10.1093/nar/gkab1028>. The 'VAM' method is outlined in: Frost (2020) <doi:10.1093/nar/gkaa582>.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | magrittr, xml2, stringr, dplyr, Seurat, SeuratObject, VAM, utils |
| Suggests: | knitr, pheatmap, rmarkdown, usethis |
| Published: | 2023-10-19 |
| DOI: | 10.32614/CRAN.package.scaper |
| Author: | H. Robert Frost [aut], Azka Javaid [aut, cre] |
| Maintainer: | Azka Javaid <azka.javaid.gr at dartmouth.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | scaper results |
| Reference manual: | scaper.pdf |
| Vignettes: |
scaper-vignette-CytoSig scaper-vignette-Reactome |
| Package source: | scaper_0.1.0.tar.gz |
| Windows binaries: | r-devel: scaper_0.1.0.zip, r-release: scaper_0.1.0.zip, r-oldrel: scaper_0.1.0.zip |
| macOS binaries: | r-release (arm64): scaper_0.1.0.tgz, r-oldrel (arm64): scaper_0.1.0.tgz, r-release (x86_64): scaper_0.1.0.tgz, r-oldrel (x86_64): scaper_0.1.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=scaper to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.