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Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, Ashley; Simon, Noah; Witten, Daniela. SCALPEL: Extracting neurons from calcium imaging data. Ann. Appl. Stat. 12 (2018), no. 4, 2430–2456. <doi:10.1214/18-AOAS1159>. <https://projecteuclid.org/euclid.aoas/1542078051>.
| Version: | 1.0.3 |
| Imports: | Matrix, R.matlab, protoclust, igraph, gam |
| Suggests: | knitr, rmarkdown |
| Published: | 2021-02-03 |
| DOI: | 10.32614/CRAN.package.scalpel |
| Author: | Ashley Petersen |
| Maintainer: | Ashley Petersen <ashleyjpete at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | www.ajpete.com/software |
| NeedsCompilation: | yes |
| CRAN checks: | scalpel results |
| Reference manual: | scalpel.pdf |
| Package source: | scalpel_1.0.3.tar.gz |
| Windows binaries: | r-devel: scalpel_1.0.3.zip, r-release: scalpel_1.0.3.zip, r-oldrel: scalpel_1.0.3.zip |
| macOS binaries: | r-release (arm64): scalpel_1.0.3.tgz, r-oldrel (arm64): scalpel_1.0.3.tgz, r-release (x86_64): scalpel_1.0.3.tgz, r-oldrel (x86_64): scalpel_1.0.3.tgz |
| Old sources: | scalpel archive |
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