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scalpel: Processes Calcium Imaging Data

Identifies the locations of neurons, and estimates their calcium concentrations over time using the SCALPEL method proposed in Petersen, Ashley; Simon, Noah; Witten, Daniela. SCALPEL: Extracting neurons from calcium imaging data. Ann. Appl. Stat. 12 (2018), no. 4, 2430–2456. <doi:10.1214/18-AOAS1159>. <https://projecteuclid.org/euclid.aoas/1542078051>.

Version: 1.0.3
Imports: Matrix, R.matlab, protoclust, igraph, gam
Suggests: knitr, rmarkdown
Published: 2021-02-03
DOI: 10.32614/CRAN.package.scalpel
Author: Ashley Petersen
Maintainer: Ashley Petersen <ashleyjpete at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: www.ajpete.com/software
NeedsCompilation: yes
CRAN checks: scalpel results

Documentation:

Reference manual: scalpel.pdf

Downloads:

Package source: scalpel_1.0.3.tar.gz
Windows binaries: r-devel: scalpel_1.0.3.zip, r-release: scalpel_1.0.3.zip, r-oldrel: scalpel_1.0.3.zip
macOS binaries: r-release (arm64): scalpel_1.0.3.tgz, r-oldrel (arm64): scalpel_1.0.3.tgz, r-release (x86_64): scalpel_1.0.3.tgz, r-oldrel (x86_64): scalpel_1.0.3.tgz
Old sources: scalpel archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=scalpel to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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