scShardSplitRef: Build Custom Reference Genome for Single-Cell Multiome ATAC and Gene Expression Data of Large-Genome Species
Provides utilities that enable researchers to build custom references for the Multiome ATAC Gene Expression sequencing data for large-genome species without manual intervention.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.3.0) |
| Imports: | cli, rlang, stringi, utils, withr |
| Suggests: | knitr, rmarkdown, roxyglobals, testthat (≥ 3.0.0) |
| Published: | 2026-07-23 |
| DOI: | 10.32614/CRAN.package.scShardSplitRef (may not be active yet) |
| Author: | Irina Kuznetsova 
[aut, cre],
Luke Pembleton
[aut],
Luca Curci [aut],
Adam H. Sparks
[aut],
Curtin University  [fnd, cph],
Grains Research and Development Corporation
[fnd, cph] (GRDC Project
CUR2210-005OPX (AAGI-CU)) |
| Maintainer: | Irina Kuznetsova <irina.kuznetsova at curtin.edu.au> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | scShardSplitRef results |
Documentation:
| Reference manual: | scShardSplitRef.html , scShardSplitRef.pdf |
| Vignettes: |
scShardSplitRef: Getting Started (source, R code) scShardSplitRef: Algorithm Description (source, R code) |
Downloads:
| Package source: | scShardSplitRef_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): scShardSplitRef_0.1.0.tgz, r-oldrel (arm64): scShardSplitRef_0.1.0.tgz, r-release (x86_64): scShardSplitRef_0.1.0.tgz, r-oldrel (x86_64): scShardSplitRef_0.1.0.tgz |
Linking:
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