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scDECO: Estimating Dynamic Correlation

Implementations for two different Bayesian models of differential co-expression. scdeco.cop() fits the bivariate Gaussian copula model from Zichen Ma, Shannon W. Davis, Yen-Yi Ho (2023) <doi:10.1111/biom.13701>, while scdeco.pg() fits the bivariate Poisson-Gamma model from Zhen Yang, Yen-Yi Ho (2022) <doi:10.1111/biom.13457>.

Version: 0.1.0
Imports: MASS, rjags, msm
Suggests: knitr, rmarkdown
Published: 2024-06-04
DOI: 10.32614/CRAN.package.scDECO
Author: Anderson Bussing [aut, cre], Yen-Yi Ho [aut, ths], Zichen Ma [aut], Zhen Yang [aut]
Maintainer: Anderson Bussing <abussing at email.sc.edu>
BugReports: https://github.com/YenYiHo-Lab/scDECO/issues
License: GPL (≥ 3)
URL: https://github.com/YenYiHo-Lab/scDECO
NeedsCompilation: no
Materials: README
CRAN checks: scDECO results

Documentation:

Reference manual: scDECO.pdf
Vignettes: scDECO-Copula
scDECO-Poisson-Gamma

Downloads:

Package source: scDECO_0.1.0.tar.gz
Windows binaries: r-devel: scDECO_0.1.0.zip, r-release: scDECO_0.1.0.zip, r-oldrel: scDECO_0.1.0.zip
macOS binaries: r-release (arm64): scDECO_0.1.0.tgz, r-oldrel (arm64): scDECO_0.1.0.tgz, r-release (x86_64): scDECO_0.1.0.tgz, r-oldrel (x86_64): scDECO_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=scDECO to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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