samc: Spatial Absorbing Markov Chains

Implements functions for working with absorbing Markov chains. The implementation is based on the framework described in "Toward a unified framework for connectivity that disentangles movement and mortality in space and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies them to spatial ecology. This framework incorporates both resistance and absorption with spatial absorbing Markov chains (SAMC) to provide several short-term and long-term predictions for metrics related to connectivity in landscapes. Despite the ecological context of the framework, this package can be used in any application of absorbing Markov chains.

Version:	4.0.0
Depends:	R (≥ 3.6.0)
Imports:	methods, Matrix (≥ 1.5-3), raster, terra (≥ 1.7-3), circular
LinkingTo:	Rcpp (≥ 1.0.10), RcppEigen (≥ 0.3.3.9.3), RcppThread (≥ 2.1.3)
Suggests:	knitr, rmarkdown, testthat, gdistance, viridisLite
Published:	2024-10-30
DOI:	10.32614/CRAN.package.samc
Author:	Andrew Marx [aut, cre, cph], Robert Fletcher [ctb], Miguel Acevedo [ctb], Jorge Sefair [ctb], Chao Wang [ctb], Hughes Josie [ctb], Barrett Griffin [ctb]
Maintainer:	Andrew Marx <ajm.rpackages at gmail.com>
BugReports:	https://github.com/andrewmarx/samc/issues/
License:	AGPL (≥ 3)
URL:	https://andrewmarx.github.io/samc/
NeedsCompilation:	yes
Citation:	samc citation info
Materials:	NEWS
CRAN checks:	samc results

Documentation:

Reference manual:	samc.pdf
Vignettes:	Overview (source, R code)

Downloads:

Package source:	samc_4.0.0.tar.gz
Windows binaries:	r-devel: samc_4.0.0.zip, r-release: samc_4.0.0.zip, r-oldrel: samc_4.0.0.zip
macOS binaries:	r-release (arm64): samc_4.0.0.tgz, r-oldrel (arm64): samc_4.0.0.tgz, r-release (x86_64): samc_4.0.0.tgz, r-oldrel (x86_64): samc_4.0.0.tgz
Old sources:	samc archive

Linking:

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