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repository: ${{ github.repository }}
–> repository: ${{ env.packageName }}
testthat
function skip_if_offline
.rmarkdown::html_vignette
instead of BiocStyle::html_document
.devtools::test_coverage()
in the terminal) #112rworkflows
package versioning with rworkflows
action Release versioning.use_vignette_docker
/use_vignette_getstarted
package
arg if not provided.construct_cont
, as not everyone will have rworkfows
installed on the machine where the vignette is being rendered.\itemize
–> describe
to avoid CRAN check errors.gha_python_versions()
within construct_runners
miniforge_variant
miniforge_version
activate_environment
environment_file
channels
construct_conda_yml
construct_conda_yml
and building conda envs from the generated yamls.fill_yaml
is_default
force=TRUE
to the remotes::install_local
steps. #86runforesight/workflow-telemetry-action
step.rspm
explicitly by default.construct_cont
:
default_registry
check_registry
docker_registry
arg to let users choose which registry to push to. Defaults to “ghcr.io” instead of “docker.io” so that no additional credentials are needed.
use_workflow
get_github_url_desc
free_diskspace
use_workflow
use_workflow
template
arg can now be “rworkflows_static:dev” to use the “dev” branch’s version of action.yml as a workflow template.use_vignette_docker
infer_docker_org
no visible global function definition for internal function check_miniconda_args
check_miniconda_args
was clearly defined in its own file. The only way to fix it was copying the function into the same one where it was called fill_yaml
.echo "GITHUB_TOKEN=${{ inputs.GITHUB_TOKEN }}" >> $GITHUB_ENV
runforesight/workflow-telemetry-action
step and move to top.infer_deps
infer_deps
the DESCRIPTION path directly within the fill_description
func.conda_*
setup-miniconda
.use_codespace
run_vignettes
.tinytex_installer
, tinytex_version
, pandoc_version
tinytex
R package.construct_runners
bioc
is of length one, the same value is automatically applied across all 3 OS.use_workflow
name
arg into two args: name
+ template
, so that you can create multiple separate workflow files using the same template.tinytex_installer
, tinytex_version
, pandoc_version
save_yaml
check_bioc_version
check_r_version
construct_cont
BiocPkgTools
+ biocViews
to Suggests
fill_yaml
omit_if_default
to omit tinytex args from yaml.is_rstudio
: new interal helper function.github_token
parameter docs between action.yml and use_workflow
.BiocPkgTools
/biocViews
to Suggests to compensate for issues with the CRAN server: #65fill_yaml
:
template="rworkflows_static"
, prevent with2
from simplifying to vector.construct_runners
rspm
wasn’t getting added.get_github_url_db
docs
size by rendering PNG instead of html in depgraph
vignette.get_hex
and get_description
get_description
use_repos
arg.@returns
in Roxygen notes.action.yml
repos
before it was defined.bibentry
for CITATION.To compensate for this had to modify test-bioc_r_versions
.
use_workflow
branch
to align with Bioc’s recent changes to their standards.get_description
unit tests.construct_authors
unit tests.infer_biocviews
tests.codecov_graphs
: Fix link with redirect.timeout
arg to R package installation steps too.AnVIL
usage, as the URLs are now deprecated and BiocManager
uses the pre-compiled binaries by default.get_description
description
obj directly to any argument returns that obj.refs
at onceget_hex
output
style arg to vignette functions.use_vignette_docker
port_in
and port_out
port_out=8900
to align with the available Imperial Private Cloud ports (8900-9000).fill_description
infer_deps
infer_biocviews
is_gha
BiocCheck
in rworkflow yamls.require()
calls in action.yml quiet.use_badges
add_codecov_graphs
codecov_graphs
bioc_r_version
:
depth
and internal func parse_version
get_hex
/ use_badges
add_hex
is a character string, interpret it as the hex path instead.use_badges
add_lifecycle
: badger::badge_lifecycle()
biocViews: WorkflowManagement
get_hex
: Remove extra breaksif
statements when rworkflows_static gets saved.is_default
as it is never used. Document in gist for later use: https://gist.github.com/bschilder/f02a5b564977f52fd665728a22c0d005use_badges
:
pkg
arg for explicit package specification.get_description
use_badges
:
ref
and pkg
explicitly in relevant functions to avoid inference.r-lib/setup-r-dependencies
r-lib/setup-tinytex
grimbough/bioc-actions/setup-bioc
timeout
r-lib/setup-r-dependencies
node_modules$
package-lock\.json$
package\.json$
no-check-CRAN
arg to BiocCheck
step to allow using bioc checks for packages already on CRAN.get_hex
in cases where multiple links in DESCRIPTION URL.use_issue_template
rvest
UpSetR
githubinstall
BiocManager
bioc_r_versions
construct_runners
rcmdcheck
\link
with \href
use_badges
: remove unnecessary ref
arg.has_latex
use_workflow
rworkflow
action.add_badges
use_readme
use_vignette_docker
use_vignettte_getstarted
|>
was introduced.badger
a Importvignette
field in use_vignette_*
functions.run_crancheck
–> run_rcmdcheck
DOCKER_ORG
–> docker_org
DOCKER_USERNAME
–> docker_user
as_cran
: separate from run_rcmdcheck
tag
: specify action version.use_workflow(run_docker=FALSE)
repository
badge
NEWS.md
file to track changes to the package.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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