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rvHPDT: Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees

To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.

Version: 4.0
Depends: gtools, R (≥ 2.15.0)
Imports: stats, utils
Published: 2022-05-12
DOI: 10.32614/CRAN.package.rvHPDT
Author: Wei Guo
Maintainer: Wei Guo <wei.guo3 at nih.gov>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: rvHPDT results

Documentation:

Reference manual: rvHPDT.pdf

Downloads:

Package source: rvHPDT_4.0.tar.gz
Windows binaries: r-devel: rvHPDT_4.0.zip, r-release: rvHPDT_4.0.zip, r-oldrel: rvHPDT_4.0.zip
macOS binaries: r-release (arm64): rvHPDT_4.0.tgz, r-oldrel (arm64): rvHPDT_4.0.tgz, r-release (x86_64): rvHPDT_4.0.tgz, r-oldrel (x86_64): rvHPDT_4.0.tgz
Old sources: rvHPDT archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=rvHPDT to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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