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rtreeoflife: Access Tree of Life Data Releases

Search species and specimen records from the Royal Botanic Gardens Tree of Life Explorer and retrieve selected genomic sequence files. Provides a bundled species index, tools for matching scientific names, and selective download helpers for sequence files. Supports tidy data workflows with list-columns, summaries, exploratory visualisation with 'ggplot2', and illustrative tree construction from shared genes.

Version: 0.1.0
Depends: R (≥ 4.1.0)
Imports: cli, dplyr, ggplot2, tibble, tools, utils
Suggests: ape, testthat (≥ 3.0.0)
Published: 2026-08-04
DOI: 10.32614/CRAN.package.rtreeoflife (may not be active yet)
Author: Paul E. Santos Andrade ORCID iD [aut, cre, cph]
Maintainer: Paul E. Santos Andrade <paulefrens at gmail.com>
BugReports: https://github.com/PaulESantos/rtreeoflife/issues
License: MIT + file LICENSE
URL: https://github.com/PaulESantos/rtreeoflife, https://treeoflife.kew.org/, https://sftp.kew.org/pub/treeoflife/current_release/
NeedsCompilation: no
Citation: rtreeoflife citation info
Materials: README, NEWS
CRAN checks: rtreeoflife results

Documentation:

Reference manual: rtreeoflife.html , rtreeoflife.pdf

Downloads:

Package source: rtreeoflife_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: rtreeoflife_0.1.0.zip, r-oldrel: rtreeoflife_0.1.0.zip
macOS binaries: r-release (arm64): rtreeoflife_0.1.0.tgz, r-oldrel (arm64): rtreeoflife_0.1.0.tgz, r-release (x86_64): rtreeoflife_0.1.0.tgz, r-oldrel (x86_64): rtreeoflife_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=rtreeoflife to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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