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ripserr: Calculate Persistent Homology with Ripser-Based Engines

Ports the Ripser <doi:10.48550/arXiv.1908.02518> and Cubical Ripser <doi:10.48550/arXiv.2005.12692> persistent homology calculation engines from C++. Can be used as a rapid calculation tool in topological data analysis pipelines.

Version: 0.3.0
Depends: R (≥ 3.5.0)
Imports: Rcpp (≥ 1.0), stats (≥ 3.0), utils (≥ 3.0)
LinkingTo: Rcpp
Suggests: covr (≥ 3.5), knitr (≥ 1.29), rmarkdown (≥ 2.3), testthat (≥ 2.3), lmtest
Published: 2025-04-06
DOI: 10.32614/CRAN.package.ripserr
Author: Raoul Wadhwa ORCID iD [aut], Matt Piekenbrock [aut], Jacob Scott ORCID iD [aut], Jason Cory Brunson ORCID iD [aut, cre], Emily Noble [ctb], Takeki Sudo [cph, ctb] (Takeki Sudo is a copyright holder for Cubical Ripser (GPL-3 license), which was refactored prior to inclusion in ripserr.), Kazushi Ahara [cph, ctb] (Kazushi Ahara is a copyright holder for Cubical Ripser (GPL-3 license), which was refactored prior to inclusion in ripserr.), Ulrich Bauer [cph, ctb] (Ulrich Bauer holds the copyright to Ripser (MIT license), which was refactored prior to inclusion in ripserr.), Xinyi Zhang [aut]
Maintainer: Jason Cory Brunson <cornelioid at gmail.com>
BugReports: https://github.com/tdaverse/ripserr/issues
License: GPL-3
URL: https://github.com/tdaverse/ripserr/
NeedsCompilation: yes
Materials: NEWS
CRAN checks: ripserr results

Documentation:

Reference manual: ripserr.pdf
Vignettes: Calculating Persistent Homology with a Cubical Complex (source, R code)
Modeling Cases of Mosquito-Borne Disease Using Persistent Homology (source, R code)
Calculating Persistent Homology with a Vietoris-Rips Complex (source, R code)

Downloads:

Package source: ripserr_0.3.0.tar.gz
Windows binaries: r-devel: ripserr_0.3.0.zip, r-release: ripserr_0.3.0.zip, r-oldrel: ripserr_0.3.0.zip
macOS binaries: r-devel (arm64): ripserr_0.3.0.tgz, r-release (arm64): ripserr_0.3.0.tgz, r-oldrel (arm64): ripserr_0.3.0.tgz, r-devel (x86_64): ripserr_0.3.0.tgz, r-release (x86_64): ripserr_0.3.0.tgz, r-oldrel (x86_64): ripserr_0.3.0.tgz
Old sources: ripserr archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ripserr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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