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R library to access species interaction data of http://globalbioticinteractions.org
To install rglobi from CRAN:
install.packages("rglobi")Or install development version:
install.packages("devtools")
devtools::install_github("ropensci/rglobi")library(rglobi)
# find all unique prey names of Homo sapiens
prey_of("Homo sapiens")$target_taxon_name
# is a shortcut of
get_interactions_by_taxa(sourcetaxon='Homo sapiens', interactiontype='preysOn')$target_taxon_name
# list of supported interactions types
get_interaction_types()
# all known prey names and locations (latitude, longitude) where birds (Aves) preyed on rodents (Rodentia) in California
obs <- get_interactions_by_taxa(sourcetaxon = "Aves", bbox=c(-125.53344800000002,32.750323,-114.74487299999998,41.574361), targettaxon = "Rodentia", returnobservations=TRUE)
locations <- cbind(obs$target_taxon_name, obs$latitude, obs$longitude)Please see R help pages (e.g. ?get_interactions_by_taxa
and vignettes
for more information.
Tests can be executed using devtools package.
# workdir should be rglobi repo root directory (check with getwd())
# install dependencies
devtools::install('.')
devtools::test()This should reload the library, executes the test_that testcases and show test reports.
roxygen2 is used to generate .Rd and NAMESPACE by running:
library(roxygen2)
roxygenize(".")Vignettes are generated using knitr and
markdown packages.
Please report any issues or bugs.
This package is part of the rOpenSci project.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.