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resevol: Simulate Agricultural Production and Evolution of Pesticide Resistance

Simulates individual-based models of agricultural pest management and the evolution of pesticide resistance. Management occurs on a spatially explicit landscape that is divided into an arbitrary number of farms that can grow one of up to 10 crops and apply one of up to 10 pesticides. Pest genomes are modelled in a way that allows for any number of pest traits with an arbitrary covariance structure that is constructed using an evolutionary algorithm in the mine_gmatrix() function. Simulations are then run using the run_farm_sim() function. This package thereby allows for highly mechanistic social-ecological models of the evolution of pesticide resistance under different types of crop rotation and pesticide application regimes.

Version: 0.3.4.0
Depends: R (≥ 4.0.0)
Imports: stats (≥ 4.0.0), utils (≥ 4.0.0)
Suggests: knitr, rmarkdown, testthat, markdown
Published: 2023-11-30
Author: A. Bradley Duthie ORCID iD [aut, cre], Rose McKeon [aut, ctr], Rosie Mangan [ctr], Luc Bussiére [ctr], Matthew Tinsley [ctr]
Maintainer: A. Bradley Duthie <brad.duthie at gmail.com>
BugReports: https://github.com/bradduthie/resevol/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://bradduthie.github.io/resevol/
NeedsCompilation: yes
Materials: README NEWS
In views: Agriculture
CRAN checks: resevol results

Documentation:

Reference manual: resevol.pdf
Vignettes: Advanced techniques
The evolutionary algorithm
resevol: an R package for spatially explicit models of pesticide resistance given evolving pest genomes

Downloads:

Package source: resevol_0.3.4.0.tar.gz
Windows binaries: r-devel: resevol_0.3.4.0.zip, r-release: resevol_0.3.4.0.zip, r-oldrel: resevol_0.3.4.0.zip
macOS binaries: r-release (arm64): resevol_0.3.4.0.tgz, r-oldrel (arm64): resevol_0.3.4.0.tgz, r-release (x86_64): resevol_0.3.4.0.tgz, r-oldrel (x86_64): resevol_0.3.4.0.tgz
Old sources: resevol archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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