refdb: A DNA Reference Library Manager

Reference database manager offering a set of functions to import, organize, clean, filter, audit and export reference genetic data. Provide functions to download sequence data from Bold Systems (<https://www.boldsystems.org/>) and NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>. Designed as an environment for semi-automatic and assisted construction of reference databases and to improve standardization and repeatability in barcoding and metabarcoding studies.

Version:	0.1.1
Depends:	R (≥ 3.1.0)
Imports:	tibble, readr, dplyr, stringr, tidyr, rentrez, bold, taxize, xml2, bioseq, ape, igraph, ggplot2, ggraph, yaml, rlang, rmarkdown, leaflet
Suggests:	testthat (≥ 3.0.0), covr, DT, knitr, forcats
Published:	2022-09-22
Author:	Francois Keck [aut, cre, cph]
Maintainer:	Francois Keck <francois.keck at gmail.com>
BugReports:	https://github.com/fkeck/refdb/issues
License:	GPL-3
URL:	https://fkeck.github.io/refdb/
NeedsCompilation:	no
Materials:	README
CRAN checks:	refdb results

Documentation:

Reference manual:	refdb.pdf
Vignettes:	Introduction to the refdb package Downloading and combining data from NCBI Genbank and BOLD

Downloads:

Package source:	refdb_0.1.1.tar.gz
Windows binaries:	r-devel: refdb_0.1.1.zip, r-release: refdb_0.1.1.zip, r-oldrel: refdb_0.1.1.zip
macOS binaries:	r-release (arm64): refdb_0.1.1.tgz, r-oldrel (arm64): refdb_0.1.1.tgz, r-release (x86_64): refdb_0.1.1.tgz, r-oldrel (x86_64): refdb_0.1.1.tgz
Old sources:	refdb archive

Linking:

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