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count_valid(): multiple
unblind_codes only checked first code.
grepl(unblind_codes, desc) silently used only the first
element when a vector was passed. Fixed with a nested
vapply loop that evaluates every code
independently.
collect_findings(): crashed on 0-row data
frame. Assigning a scalar to a 0-row data frame column with
$<- caused
replacement has 1 row, data has 0. Fixed with an
nrow > 0 guard; 0-row input now produces a valid
summary_log entry with nu = 0.
build_reports(): all_open.xlsx
could not be read back.
readxl::read_xlsx(range = "A3:L500000") threw an error on
Windows when the range exceeded the actual column count (10 columns).
Replaced with skip = 2 which auto-detects the column
count.
build_reports(): date parsing failed for ISO
string dates. FIND DATE was stored as an ISO
string ("2024-01-15") by openxlsx but
converted with as.numeric() only, producing NA
for every row. Added .parse_date_col() helper that tries
Excel serial number, ISO string, and ddMMMYYYY format in
sequence.
build_reports():
[Was closed but re-appeared] applied to all rows.
The auto-note condition checked the already-reassigned status rather
than the original status from the previous run. Fixed by preserving
old_status before reassignment and checking it in the
auto-note logic.
build_reports(): NA visit IDs
failed to match in merge(). merge()
in R does not match NA == NA. Fixed using a -1
sentinel value before every merge, restored to NA
after.
build_reports(): duplicate auto-tags
accumulated across runs. Re-running multiple times appended the
same tag with different dates. Fixed by stripping existing tags of the
same type before appending the updated one.
run_checks(): check scripts could not find
collect_findings().
new.env(parent = baseenv()) cut off the
rCoreGage namespace from the check script’s lookup chain.
Fixed to new.env(parent = environment()) so all exported
package functions are visible inside check scripts.
run_checks(): removed <<-
global environment modification. The previous
local({}) + <<- pattern was replaced with
new.env() + sys.source() to comply with CRAN policy
prohibiting modification of the global environment.
\dontrun{} examples replaced with
\donttest{}.@examples blocks are now fully self-contained using
tempdir() and system.file() no project setup
required to run them.stringr removed from Imports field (was
declared but never called).utils::read.csv() qualified;
importFrom(utils, read.csv) added to
NAMESPACE.utils::globalVariables(".data") added in
R/globals.R to suppress R CMD check NOTE for
dplyr column references.setNames() calls replaced with structure()
and names() <- to avoid undeclared dependency on the
stats package.dplyr column references replaced with
.data$ pronoun in run_checks().DESCRIPTION: software name 'Excel' quoted;
all acronyms (DM, MW, SDTM,
ADaM, CDISC) expanded; CDISC reference URL
added; Description field restructured to end with a
complete sentence.@description in runner.R:
check_<rule_set> angle brackets replaced with
check_RULESET to prevent LaTeX PDF build errors.vignettes/getting-started.Rmd: hardcoded
C:/Projects path replaced with tempdir().rules/trial/ and rules/study/ folders.rule_registry.xlsx as the central check registry with
Active, report-type, and Rule_Set
columns.create_project() scaffolds a complete project folder
structure.openxlsx.outputs/feedback/ folder.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.