Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) <doi:10.1534/genetics.120.303080>.
| Version: |
0.2.4 |
| Depends: |
R (≥ 4.0) |
| Imports: |
ggplot2 (≥ 3.1), abind (≥ 1.4), MASS (≥ 7.3), gtools (≥
3.9.2), CompQuadForm, Matrix, RLRsim, mvtnorm, nlme, quadprog, parallel, doParallel, foreach, stats, methods, mappoly, Rcpp (≥ 0.12.19) |
| LinkingTo: |
Rcpp, RcppArmadillo, RcppProgress |
| Suggests: |
rmarkdown, devtools, knitr |
| Published: |
2024-03-25 |
| DOI: |
10.32614/CRAN.package.qtlpoly |
| Author: |
Guilherme da Silva Pereira
 [aut],
Marcelo Mollinari
[ctb],
Gabriel de Siqueira Gesteira
[ctb, cre],
Zhao-Bang Zeng
[ctb],
Long Qu [ctb] (R code for variance component tests using score
statistics in R/varComp.R),
Giovanny Covarrubias-Pazaran [ctb] (C code for fitting mixed models
with REML estimation in src/MNR.cpp) |
| Maintainer: |
Gabriel de Siqueira Gesteira <gdesiqu at ncsu.edu> |
| BugReports: |
https://github.com/gabrielgesteira/QTLpoly/issues |
| License: |
GPL-3 |
| URL: |
https://gabrielgesteira.github.io/QTLpoly/ |
| NeedsCompilation: |
yes |
| Citation: |
qtlpoly citation info |
| Materials: |
README |
| In views: |
Agriculture |
| CRAN checks: |
qtlpoly results |