The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

qtlpoly: Random-Effect Multiple QTL Mapping in Autopolyploids

Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) <doi:10.1534/genetics.120.303080>.

Version: 0.2.4
Depends: R (≥ 4.0)
Imports: ggplot2 (≥ 3.1), abind (≥ 1.4), MASS (≥ 7.3), gtools (≥ 3.9.2), CompQuadForm, Matrix, RLRsim, mvtnorm, nlme, quadprog, parallel, doParallel, foreach, stats, methods, mappoly, Rcpp (≥ 0.12.19)
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
Suggests: rmarkdown, devtools, knitr
Published: 2024-03-25
DOI: 10.32614/CRAN.package.qtlpoly
Author: Guilherme da Silva Pereira ORCID iD [aut], Marcelo Mollinari ORCID iD [ctb], Gabriel de Siqueira Gesteira ORCID iD [ctb, cre], Zhao-Bang Zeng ORCID iD [ctb], Long Qu [ctb] (R code for variance component tests using score statistics in R/varComp.R), Giovanny Covarrubias-Pazaran [ctb] (C code for fitting mixed models with REML estimation in src/MNR.cpp)
Maintainer: Gabriel de Siqueira Gesteira <gdesiqu at ncsu.edu>
BugReports: https://github.com/gabrielgesteira/QTLpoly/issues
License: GPL-3
URL: https://gabrielgesteira.github.io/QTLpoly/
NeedsCompilation: yes
Citation: qtlpoly citation info
Materials: README
In views: Agriculture
CRAN checks: qtlpoly results

Documentation:

Reference manual: qtlpoly.pdf

Downloads:

Package source: qtlpoly_0.2.4.tar.gz
Windows binaries: r-devel: qtlpoly_0.2.4.zip, r-release: qtlpoly_0.2.4.zip, r-oldrel: qtlpoly_0.2.4.zip
macOS binaries: r-release (arm64): qtlpoly_0.2.4.tgz, r-oldrel (arm64): qtlpoly_0.2.4.tgz, r-release (x86_64): qtlpoly_0.2.4.tgz, r-oldrel (x86_64): qtlpoly_0.2.4.tgz
Old sources: qtlpoly archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=qtlpoly to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.