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qtl2pleio: Testing Pleiotropy in Multiparental Populations

We implement an adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111> and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that our test accommodates multiparental populations.

Version: 1.4.3
Depends: R (≥ 3.2)
Imports: dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, tibble, parallel
LinkingTo: Rcpp, RcppEigen
Suggests: covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools, qtl2, parallelly
Published: 2020-12-02
DOI: 10.32614/CRAN.package.qtl2pleio
Author: Frederick J Boehm ORCID iD [aut, cre]
Maintainer: Frederick J Boehm <frederick.boehm at gmail.com>
BugReports: https://github.com/fboehm/qtl2pleio/issues
License: MIT + file LICENSE
URL: https://github.com/fboehm/qtl2pleio
NeedsCompilation: yes
Language: en-US
Citation: qtl2pleio citation info
Materials: README NEWS
CRAN checks: qtl2pleio results

Documentation:

Reference manual: qtl2pleio.pdf
Vignettes: Using HTCondor for bootstrap analysis

Downloads:

Package source: qtl2pleio_1.4.3.tar.gz
Windows binaries: r-devel: qtl2pleio_1.4.3.zip, r-release: qtl2pleio_1.4.3.zip, r-oldrel: qtl2pleio_1.4.3.zip
macOS binaries: r-release (arm64): qtl2pleio_1.4.3.tgz, r-oldrel (arm64): qtl2pleio_1.4.3.tgz, r-release (x86_64): qtl2pleio_1.4.3.tgz, r-oldrel (x86_64): qtl2pleio_1.4.3.tgz
Old sources: qtl2pleio archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=qtl2pleio to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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