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ranger num.threads = 1, xgboost
nthread = 1), in line with CRAN’s at-most-2-cores policy;
raise via control for real analyses (fixes the CRAN
incoming pre-test NOTE “Re-building vignettes had CPU time 7.7 times
elapsed time”). Selection results are unchanged.Initial release, implementing Kabata, Stuart & Shintani (2024), BMC Medical Research Methodology 24:228, doi:10.1186/s12874-024-02350-y.
psave(): model-averaged propensity scores as a convex
combination of candidate models ("glm",
"rpart", "ranger", "xgboost" by
default; any "SL.*" SuperLearner wrapper; or user-supplied
ps.matrix/prog.matrix), with mixing weights
selected on a simplex grid.ps.append / prog.append: extra
user-supplied candidate score columns (a vector of length n, or a
matrix/all-numeric data frame with unique column names) appended AFTER
the candidates from ps.methods/ps.matrix and
prog.methods/prog.matrix. Appended propensity
columns are validated (strictly in (0, 1)) and clipped like every other
candidate; grid tie-breaking favors the base candidates. Supplying
prog.matrix or prog.append without
outcome is an explicit error (prognostic candidates require
the outcome; gamma is selected by outcome-prediction MSE among untreated
units)."prog"
(weighted ASMD of the model-averaged prognostic score, the recommended
default; per-candidate targets via prog.target),
"smd", "ks", and "logloss".
Estimands: ATT (default) and ATE, with the supplement’s
estimand-specific weight formulas.gamma selected by
unweighted untreated-set MSE. gaussian() and
binomial() outcome families.average = FALSE vertex mode selects the single best
candidate propensity score by the chosen criterion.fit$ps drops into
MatchIt::matchit(distance = ) and
WeightIt::weightit(ps = ); psave_match() /
psave_weight() wrappers reuse the stored formula and data
to eliminate row-misalignment; cobalt::bal.tab() works
directly on psave objects.print() (with the literal next call),
summary() (mixing weights, all-criteria diagnostics table,
full balance table), plot() ("balance",
"distribution", "criterion"),
fitted(), weights(), predict()
(with keep.fits = TRUE).simplex_grid() (integer-composition
simplex enumeration defining the tie-breaking order) and
psave_criteria() (all four criteria for any propensity
score vector).rowSums == 1 filter silently dropped ~10.6% of grid
points); proper weighted-eCDF KS statistic; binomial()
family for binary responses; no train/test-inconsistent
scale(); strict complete-case handling (NAs
error, never dropped). See
vignette("method-details", package = "psAve").survey::svyglm()), and Method details.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.