To cite the porridge package in publications please use:

van Wieringen WN, Aflakparast M (2024). porridge: Ridge-Type Estimation of a Potpourri of Models. R package version 0.3.3, https://CRAN.R-project.org/package=porridge.

Aflakparast M, de Gunst MCM, van Wieringen WN (2018). “Reconstruction of molecular network evolution from cross-sectional omics data.” Biometrical Journal, 60(3), 547-563.

van Wieringen WN (2019). “The generalized ridge estimator of the inverse covariance matrix.” Journal of Computational and Graphical Statistics, 28(4), 932-942.

van Wieringen WN (2021). Lecture notes on ridge regression, volume arXiv:1509.09169. Arxiv.

van Wieringen WN, Binder H (2022). “Sequential learning of regression models by penalized estimation.” Journal of Computational and Graphical Statistics.

van Wieringen WN, Chen Y (2021). “Penalized estimation of the Gaussian graphical model from data with replicates.” Statistics in Medicine, 40(19), 4279-4293.

van Wieringen WN, Stam KA, Peeters CFW, van de Wiel MA (2020). “Updating of the Gaussian graphical model through targeted penalized estimation.” Journal of Multivariate Analysis, 178(article 104621).

Corresponding BibTeX entries:

  @Manual{,
    title = {porridge: Ridge-Type Estimation of a Potpourri of Models},
    author = {W. N. {van Wieringen} and M. Aflakparast},
    year = {2024},
    note = {R package version 0.3.3},
    url = {https://CRAN.R-project.org/package=porridge},
  }

  @Article{,
    title = {Reconstruction of molecular network evolution from
      cross-sectional omics data},
    author = {M. Aflakparast and M. C. M. {de Gunst} and W. N. {van
      Wieringen}},
    journal = {Biometrical Journal},
    volume = {60},
    number = {3},
    pages = {547-563},
    year = {2018},
  }

  @Article{,
    title = {The generalized ridge estimator of the inverse covariance
      matrix},
    author = {W. N. {van Wieringen}},
    journal = {Journal of Computational and Graphical Statistics},
    volume = {28},
    number = {4},
    pages = {932-942},
    year = {2019},
  }

  @Book{,
    title = {Lecture notes on ridge regression},
    author = {W. N. {van Wieringen}},
    journal = {Arxiv preprint},
    volume = {arXiv:1509.09169},
    year = {2021},
    publisher = {Arxiv},
  }

  @Article{,
    title = {Sequential learning of regression models by penalized
      estimation},
    author = {W. N. {van Wieringen} and H. Binder},
    journal = {Journal of Computational and Graphical Statistics},
    year = {2022},
  }

  @Article{,
    title = {Penalized estimation of the Gaussian graphical model from
      data with replicates},
    author = {W. N. {van Wieringen} and Y. Chen},
    journal = {Statistics in Medicine},
    volume = {40},
    number = {19},
    pages = {4279-4293},
    year = {2021},
  }

  @Article{,
    title = {Updating of the Gaussian graphical model through targeted
      penalized estimation},
    author = {W. N. {van Wieringen} and K, A, Stam and C. F. W. Peeters
      and M. A. {van de Wiel}},
    journal = {Journal of Multivariate Analysis},
    volume = {178},
    number = {article 104621},
    year = {2020},
  }