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poolABC: Approximate Bayesian Computation with Pooled Sequencing Data
Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.
| Version: |
1.0.0 |
| Depends: |
R (≥ 2.10) |
| Imports: |
doParallel, foreach, ggplot2, graphics, locfit, MetricsWeighted, nnet, poolHelper (≥ 1.1.0), RColorBrewer, rlang, scrm, stats, utils |
| Suggests: |
knitr, rmarkdown |
| Published: |
2023-08-08 |
| DOI: |
10.32614/CRAN.package.poolABC |
| Author: |
João Carvalho 
[aut, cre, cph],
Vítor Sousa [aut] |
| Maintainer: |
João Carvalho <jgcarvalho at fc.ul.pt> |
| BugReports: |
https://github.com/joao-mcarvalho/poolABC/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/joao-mcarvalho/poolABC |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
poolABC results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=poolABC
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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