polymapR: Linkage Analysis in Outcrossing Polyploids

Creation of linkage maps in polyploid species from marker dosage scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species, as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0, both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.

Version:	1.1.6
Depends:	R (≥ 3.5.0)
Imports:	doParallel, foreach, graphics, grDevices, igraph, knitr, MDSMap, stats, utils
Suggests:	ggplot2, Hmisc, RColorBrewer, reshape2, rmarkdown, polyRAD, updog, mappoly
Published:	2024-05-31
DOI:	10.32614/CRAN.package.polymapR
Author:	Peter Bourke [aut, cre], Geert van Geest [aut], Roeland Voorrips [ctb], Yanlin Liao [ctb]
Maintainer:	Peter Bourke <pbourkey at gmail.com>
License:	GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation:	no
Citation:	polymapR citation info
In views:	Agriculture
CRAN checks:	polymapR results

Documentation:

Reference manual:	polymapR.pdf
Vignettes:	Using genotype probabilities in polymapR How to use polymapR

Downloads:

Package source:	polymapR_1.1.6.tar.gz
Windows binaries:	r-devel: polymapR_1.1.6.zip, r-release: polymapR_1.1.6.zip, r-oldrel: polymapR_1.1.6.zip
macOS binaries:	r-release (arm64): polymapR_1.1.6.tgz, r-oldrel (arm64): polymapR_1.1.6.tgz, r-release (x86_64): polymapR_1.1.6.tgz, r-oldrel (x86_64): polymapR_1.1.6.tgz
Old sources:	polymapR archive

Reverse dependencies:

Reverse suggests:

mappoly, polyqtlR, segtest

Linking:

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