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Reads/write binary genotype file compatible with 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into/from a R matrix; traverse genotype data one windows of variants at a time, like apply() or a for loop; reads/writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM> into/from a R square matrix. It is best used for bringing data produced by 'PLINK' and 'GCTA' into R workflow.
| Version: | 0.2.1 |
| Depends: | R (≥ 3.5.0) |
| Published: | 2023-11-24 |
| DOI: | 10.32614/CRAN.package.plinkFile |
| Author: | Xiaoran Tong [aut, cre] |
| Maintainer: | Xiaoran Tong <xiaoran.tong.cn at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | plinkFile results |
| Reference manual: | plinkFile.pdf |
| Package source: | plinkFile_0.2.1.tar.gz |
| Windows binaries: | r-devel: plinkFile_0.2.1.zip, r-release: plinkFile_0.2.1.zip, r-oldrel: plinkFile_0.2.1.zip |
| macOS binaries: | r-release (arm64): plinkFile_0.2.1.tgz, r-oldrel (arm64): plinkFile_0.2.1.tgz, r-release (x86_64): plinkFile_0.2.1.tgz, r-oldrel (x86_64): plinkFile_0.2.1.tgz |
| Old sources: | plinkFile archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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