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pkgndep: Analyze Dependency Heaviness of R Packages
A new metric named 'dependency heaviness' is proposed that measures the number
of additional dependency packages that a parent package brings to its child package
and are unique to the dependency packages imported by all other parents.
The dependency heaviness analysis is visualized by a customized heatmap.
The package is described in <doi:10.1093/bioinformatics/btac449>.
We have also performed the dependency heaviness analysis on the CRAN/Bioconductor
package ecosystem and the results are implemented as a web-based database
which provides comprehensive tools for querying dependencies of individual R packages.
The systematic analysis on the CRAN/Bioconductor ecosystem is described in
<doi:10.1016/j.jss.2023.111610>. From 'pkgndep' version 2.0.0, the heaviness
database includes snapshots of the CRAN/Bioconductor ecosystems for many old R versions.
| Version: |
1.99.3 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
ComplexHeatmap (≥ 2.6.0), GetoptLong, GlobalOptions, utils, grid, hash, methods, BiocManager, brew, BiocVersion |
| Suggests: |
knitr, rmarkdown, svglite, callr, rjson, Rook, igraph, ggplot2, ggrepel, base64, testthat, cowplot |
| Published: |
2023-10-13 |
| Author: |
Zuguang Gu  [aut,
cre] |
| Maintainer: |
Zuguang Gu <z.gu at dkfz.de> |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/jokergoo/pkgndep |
| NeedsCompilation: |
no |
| Citation: |
pkgndep citation info |
| Materials: |
NEWS |
| CRAN checks: |
pkgndep results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=pkgndep
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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