phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Version:	0.1.1
Depends:	R (≥ 3.5.0), ggplot2 (≥ 2.2.1), phyloseq (≥ 1.24.0)
Imports:	ggnetwork (≥ 0.5.1), igraph (≥ 1.1.2)
Suggests:	knitr, rmarkdown
Published:	2024-02-05
DOI:	10.32614/CRAN.package.phyloseqGraphTest
Author:	Julia Fukuyama [aut, cre]
Maintainer:	Julia Fukuyama <julia.fukuyama at gmail.com>
License:	CC0
URL:	https://github.com/jfukuyama/phyloseqGraphTest
NeedsCompilation:	no
CRAN checks:	phyloseqGraphTest results

Documentation:

Reference manual:	phyloseqGraphTest.pdf
Vignettes:	Graph Testing Vignette

Downloads:

Package source:	phyloseqGraphTest_0.1.1.tar.gz
Windows binaries:	r-devel: phyloseqGraphTest_0.1.1.zip, r-release: phyloseqGraphTest_0.1.1.zip, r-oldrel: phyloseqGraphTest_0.1.1.zip
macOS binaries:	r-release (arm64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (arm64): phyloseqGraphTest_0.1.1.tgz, r-release (x86_64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (x86_64): phyloseqGraphTest_0.1.1.tgz
Old sources:	phyloseqGraphTest archive

Reverse dependencies:

Reverse suggests:

MiscMetabar, pctax

Linking:

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