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Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0), ggplot2 (≥ 2.2.1), phyloseq (≥ 1.24.0) |
| Imports: | ggnetwork (≥ 0.5.1), igraph (≥ 1.1.2) |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-02-05 |
| Author: | Julia Fukuyama [aut, cre] |
| Maintainer: | Julia Fukuyama <julia.fukuyama at gmail.com> |
| License: | CC0 |
| URL: | https://github.com/jfukuyama/phyloseqGraphTest |
| NeedsCompilation: | no |
| CRAN checks: | phyloseqGraphTest results |
| Reference manual: | phyloseqGraphTest.pdf |
| Vignettes: |
Graph Testing Vignette |
| Package source: | phyloseqGraphTest_0.1.1.tar.gz |
| Windows binaries: | r-devel: phyloseqGraphTest_0.1.1.zip, r-release: phyloseqGraphTest_0.1.1.zip, r-oldrel: phyloseqGraphTest_0.1.1.zip |
| macOS binaries: | r-release (arm64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (arm64): phyloseqGraphTest_0.1.1.tgz, r-release (x86_64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (x86_64): phyloseqGraphTest_0.1.1.tgz |
| Old sources: | phyloseqGraphTest archive |
| Reverse suggests: | MiscMetabar, pctax |
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These binaries (installable software) and packages are in development.
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