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phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data

Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) <http://www.jstor.org/stable/2958919>, and the tests are described in more detail in Callahan et al. (2016) <doi:10.12688/f1000research.8986.1>.

Version: 0.1.1
Depends: R (≥ 3.5.0), ggplot2 (≥ 2.2.1), phyloseq (≥ 1.24.0)
Imports: ggnetwork (≥ 0.5.1), igraph (≥ 1.1.2)
Suggests: knitr, rmarkdown
Published: 2024-02-05
DOI: 10.32614/CRAN.package.phyloseqGraphTest
Author: Julia Fukuyama [aut, cre]
Maintainer: Julia Fukuyama <julia.fukuyama at gmail.com>
License: CC0
URL: https://github.com/jfukuyama/phyloseqGraphTest
NeedsCompilation: no
CRAN checks: phyloseqGraphTest results

Documentation:

Reference manual: phyloseqGraphTest.pdf
Vignettes: Graph Testing Vignette

Downloads:

Package source: phyloseqGraphTest_0.1.1.tar.gz
Windows binaries: r-devel: phyloseqGraphTest_0.1.1.zip, r-release: phyloseqGraphTest_0.1.1.zip, r-oldrel: phyloseqGraphTest_0.1.1.zip
macOS binaries: r-release (arm64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (arm64): phyloseqGraphTest_0.1.1.tgz, r-release (x86_64): phyloseqGraphTest_0.1.1.tgz, r-oldrel (x86_64): phyloseqGraphTest_0.1.1.tgz
Old sources: phyloseqGraphTest archive

Reverse dependencies:

Reverse suggests: MiscMetabar, pctax

Linking:

Please use the canonical form https://CRAN.R-project.org/package=phyloseqGraphTest to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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