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Implements novel tools for estimating sample sizes needed for phylogenetic studies, including studies focused on estimating the probability of true pathogen transmission between two cases given phylogenetic linkage and studies focused on tracking pathogen variants at a population level. Methods described in Wohl, Giles, and Lessler (2021) and in Wohl, Lee, DiPrete, and Lessler (2023).
Version: | 1.0.1 |
Depends: | R (≥ 2.10), stats |
Imports: | cli, lifecycle, rlang |
Suggests: | cowplot, ggplot2, knitr, purrr, RColorBrewer, reshape2, rmarkdown, testthat (≥ 3.0.0) |
Published: | 2023-05-23 |
DOI: | 10.32614/CRAN.package.phylosamp |
Author: | Shirlee Wohl [aut, ctb],
Elizabeth C Lee [aut, ctb],
Lucy D'Agostino McGowan
|
Maintainer: | Justin Lessler <jlessler at unc.edu> |
BugReports: | https://github.com/HopkinsIDD/phylosamp/issues |
License: | GPL-2 |
URL: | https://github.com/HopkinsIDD/phylosamp |
NeedsCompilation: | no |
Citation: | phylosamp citation info |
Materials: | README NEWS |
CRAN checks: | phylosamp results |
Package source: | phylosamp_1.0.1.tar.gz |
Windows binaries: | r-devel: phylosamp_1.0.1.zip, r-release: phylosamp_1.0.1.zip, r-oldrel: phylosamp_1.0.1.zip |
macOS binaries: | r-release (arm64): phylosamp_1.0.1.tgz, r-oldrel (arm64): phylosamp_1.0.1.tgz, r-release (x86_64): phylosamp_1.0.1.tgz, r-oldrel (x86_64): phylosamp_1.0.1.tgz |
Old sources: | phylosamp archive |
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