The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
phylopred: Predicting Species Interactions from Phylogenetic Distance
Tools to model and predict host-parasite (and other pairwise
species) interactions from phylogenetic distance under presence-only
data. Provides pairwise host-sharing logistic models with
cluster-aware bootstrap and slope comparison between clades,
presence-only performance metrics (a threshold efficiency metric and
a phylogenetic partial receiver operating characteristic (ROC) adapted
from Peterson, Papes and Soberon (2008)
<doi:10.1016/j.ecolmodel.2007.11.008>), positive-unlabeled
host prediction, and leave-hosts-out validation. Methods build on
Robles-Fernandez and Lira-Noriega (2017) <doi:10.3389/fams.2017.00017>.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
graphics, stats, utils, xplus |
| Suggests: |
ape, cofid, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2026-10-14 |
| DOI: |
10.32614/CRAN.package.phylopred (may not be active yet) |
| Author: |
Angel Robles 
[aut, cre] |
| Maintainer: |
Angel Robles <a.l.robles.fernandez at gmail.com> |
| BugReports: |
https://github.com/alrobles/phylopred/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/alrobles/phylopred,
https://alrobles.github.io/phylopred/ |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
phylopred results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=phylopred
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.