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The spatial interpolation of genetic distances between samples is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.
| Version: | 2.0.2 |
| Suggests: | geometry, raster, gdistance |
| Published: | 2019-12-12 |
| DOI: | 10.32614/CRAN.package.phylin |
| Author: | Pedro Tarroso, Guillermo Velo-Anton, Silvia Carvalho |
| Maintainer: | Pedro Tarroso <ptarroso at cibio.up.pt> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://www.r-project.org, https://github.com/ptarroso/phylin |
| NeedsCompilation: | no |
| Citation: | phylin citation info |
| In views: | MissingData |
| CRAN checks: | phylin results |
| Reference manual: | phylin.pdf |
| Vignettes: |
Phylin: a step-by-step tutorial Phylin with resistance |
| Package source: | phylin_2.0.2.tar.gz |
| Windows binaries: | r-devel: phylin_2.0.2.zip, r-release: phylin_2.0.2.zip, r-oldrel: phylin_2.0.2.zip |
| macOS binaries: | r-release (arm64): phylin_2.0.2.tgz, r-oldrel (arm64): phylin_2.0.2.tgz, r-release (x86_64): phylin_2.0.2.tgz, r-oldrel (x86_64): phylin_2.0.2.tgz |
| Old sources: | phylin archive |
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