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pegs: Pseudo-Expectation Gauss-Seidel

A lightweight, dependency-free, and simplified implementation of the Pseudo-Expectation Gauss-Seidel (PEGS) algorithm. It fits the multivariate ridge regression model for genomic prediction Xavier and Habier (2022) <doi:10.1186/s12711-022-00730-w> and Xavier et al. (2025) <doi:10.1093/genetics/iyae179>, providing heritability estimates, genetic correlations, breeding values, and regression coefficient estimates for prediction. This package provides an alternative to the 'bWGR' package by Xavier et al. (2019) <doi:10.1093/bioinformatics/btz794> by using 'LAPACK' for its algebraic operations.

Version: 0.2
Depends: R (≥ 2.10)
Published: 2025-12-12
DOI: 10.32614/CRAN.package.pegs
Author: Alencar Xavier [aut, cre], David Habier [aut]
Maintainer: Alencar Xavier <alenxav at gmail.com>
License: GPL-3
NeedsCompilation: yes
Citation: pegs citation info
CRAN checks: pegs results

Documentation:

Reference manual: pegs.html , pegs.pdf

Downloads:

Package source: pegs_0.2.tar.gz
Windows binaries: r-devel: not available, r-release: pegs_0.2.zip, r-oldrel: pegs_0.2.zip
macOS binaries: r-release (arm64): pegs_0.2.tgz, r-oldrel (arm64): pegs_0.2.tgz, r-release (x86_64): pegs_0.2.tgz, r-oldrel (x86_64): pegs_0.2.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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