NEWS | R Documentation |
News for Package 'papeR'
Changes in papeR version 1.0-6 (2025-04-01)
Miscellaneous
Included original authors of functions that are used in a modified form in this package as contributors in
Authors@R
field in ‘DESCRIPTION’.
Bug-fixes
Fixed links in manuals.
Removed Travis-CI integration from ‘README.md’.
Updated ‘inst/CITATION’ to new
bibentry
format.Added missing S3 methods for
prettify
.Fixed calls to S3 methods by correcting object names and adding
...
where missing.
Changes in papeR version 1.0-5 (2021-03-19)
Bug-fixes
Fixed error introduced by changes in survival:
data(ovarian, package = "survival")
was replaced withdata(cancer, package = "survival")
.
Changes in papeR version 1.0-4 (2019-01-03)
Bug-fixes
Fixed vignette (load knitr correctly).
Added rmarkdown to
Suggests:
.Fixed handling of trailing zeros in
prettify
(fixes #40).
Changes in papeR version 1.0-3 (2018-09-11)
Bug-fixes
Changes in papeR version 1.0-2 (2017-02-16)
Miscellaneous
Updated maintainer's email address.
Bug-fixes
Fix scoping in
summarize
function (fixes #33).Removed
confint.lme
to make CRAN happy (fixes #34).Fixed bug in
label
assignment with numericalwhich
.
Changes in papeR version 1.0-1 (2016-04-08)
User-visible changes
-
print.xtable.summary
now also centers tables per default iffloating = FALSE
. Added support for Cox frailty models in
prettify
Fixed problem with
include.rownames
by ignoring the option (fixes #30).Use
$-$
per default for negative numeric values (fixes #32).
Bug-fixes
Make tests compatible with new testthat version (> 0.11.0).
Fixed messages of old summary functions.
Changes in papeR version 1.0-0 (2015-12-01)
User-visible changes
-
summarize
produces summary tables that can be further processed withxtable
orkable
to produce LaTeX or Markdown tables, respectively (closes #2 and #3). -
latex.table.cont
andlatex.table.fac
are now deprecated. Usesummarize
instead. -
labels()
are now stored as attribute of the variable instead of as attribute of the data set (closes #1).
Miscellaneous
Completely refactored code base.
Added two vignettes (closes #7).
The package is now extensively tested using
testthat
(closes #12).
Bug-fixes
Adhere to CRAN policies regarding import of base packages (closes #8).
Changes in papeR version 0.6-1 (2015-06-09)
Miscellaneous
Fixed ‘man/toLatex.Rd’: Changed
\donttest
to\dontrun
-
‘DESCRIPTION’ now uses single quotes for package and software names.
Bug-fixes
Fixed ‘inst/CITATION’: Now it is possible to extract citation without the need to install the package.
Changes in papeR version 0.6-0 (2015-06-05)
User-visible changes
-
latex.table.fac
:Allow more than two groups.
Added p-values.
Added option to display fractions or percentages (
percent = TRUE
). The latter is the default.Changed default to
digits = 3
.Generally improved display of grouped statistics.
Miscellaneous
Added ‘inst/CITATION’ file.
Added ‘inst/COPYRIGHTS’ file.
Added ‘inst/CONTRIBUTIONS’ file.
Updated ‘DESCRIPTION’ to reflect CRAN policies.
Changed URL in ‘DESCRIPTION’ to https://github.com/hofnerb/papeR.
Bug-fixes
Do not replace registered S3 methods from base/recommended packages (#5).
Fixed handling of
levels()
.Fixed bug with factor levels.
-
latex.table.fac
andlatex.table.cont
: fixed handling of missing values ingroup
.
Changes in papeR version 0.5-0 (2014-11-13)
User-visible changes
Exported
plot.labeled.data.frame
(and some other functions for labeleddata.frame
s)Greatly improved
plot
function for labeleddata.frame
s
Miscellaneous
Changed plain text ‘NEWS’ to ‘inst/NEWS.Rd’
The package now enhances nlme, lme4 and survival. Thus, we no longer import lme4 and survival.
Bug-fixes
Fixed bug in
toLatex.sessionInfo(, citations = FALSE)
(spotted by Brian S. Diggs <brian.s.diggs __at__ gmail.com>)Changed
plot(data, ...)
toplot(x, ...)
to make the generic function happy.
Changes in papeR version 0.4-0 (2013-09-13)
included (experimental) version of
prettify.summary.merMod
to make lme4 (>= 1.0.0) happyincluded better handling of environments in
prettify
functions and checks if the data has changedincluded possibility to specify confidence intervals directly via
confint
, e.g.prettify(summary(mod), confint = confint(mod))
better handling of
NAMESPACES
andImports
added (first) software tests
Changes in papeR version 0.3-0 (2013-08-07)
first release to CRAN
improvement/bugfix in
rbind.labeled.data.frame()
improvement of
toLatex.sessionInfo()
: file can beNULL
now (no BibTeX file created on HDD)added plot function for
labeled.data.frame
objects that allows for univariate plots and grouped, bivariate plotsnumerous improvements in manuals
Changes in papeR version 0.2-0 (2013-07-01)
greatly improved
prettify
functions:added prettify functions for
summary.coxph
,summary.lme
,summary.mer
andanova
added confidence intervals to all model based
prettify
functions and madeconfint = TRUE
the default; confidence intervalls are computed by refitting the model withinprettify
and usingconfint()
on this model (experimental)improved handling of p-values
added new class
"labeled.data.frame"
with specialsubset
,cbind
andrbind
functions (to keep labels when changing data set)added "shortcut" to define labels using
labels = TRUE
inlatex.tables.XXX
:labels are extracted from
labeled.data.frame
directlynew
toLatex
function forsessionInfo()
[with nicer results than the default function from base R: e.g. citations are included]
Changes in papeR version 0.1-0 (2013-01-21)
initial version
improvement of
prettify
functionadded
prettify
functions for more object classesadded function
toLatex
to sanitize code for usage in LaTeXimproved label handling when data set is alterd (e.g. variables dropped, added or renamed)