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Computes A-, MV-, D- and E-optimal or near-optimal row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all pairwise treatment contrasts. The algorithms used in this package are based on the array exchange and treatment exchange algorithms adopted from Debusho, Gemechu and Haines (2016, unpublished) algorithms after adjusting for the row-column designs setup. The package also provides an optional method of using the graphical user interface (GUI) R package tcltk to ensure that it is user friendly.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.3.2), MASS, Matrix, igraph, tcltk |
| Published: | 2017-04-12 |
| Author: | Legesse Kassa Debusho, Dibaba Bayisa Gemechu, and Linda Haines |
| Maintainer: | Dibaba Bayisa Gemechu <diboobayu at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| In views: | ExperimentalDesign |
| CRAN checks: | optrcdmaeAT results |
| Reference manual: | optrcdmaeAT.pdf |
| Package source: | optrcdmaeAT_1.0.0.tar.gz |
| Windows binaries: | r-devel: optrcdmaeAT_1.0.0.zip, r-release: optrcdmaeAT_1.0.0.zip, r-oldrel: optrcdmaeAT_1.0.0.zip |
| macOS binaries: | r-release (arm64): optrcdmaeAT_1.0.0.tgz, r-oldrel (arm64): optrcdmaeAT_1.0.0.tgz, r-release (x86_64): optrcdmaeAT_1.0.0.tgz, r-oldrel (x86_64): optrcdmaeAT_1.0.0.tgz |
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