The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
When utilizing full matching, a user may want to introduce restrictions to the potential match sets. There are two main reasons to do this.
In optmatch 0.9-11 and above, optmatch
objects can be
easily combined to facilitate breaking a problem into smaller
sub-problems and reconstituting a matched structure on the entire data
set. To demonstrate this, let’s consider the infert
data
set.
> data(infert)
> head(infert)
## education age parity induced case spontaneous stratum pooled.stratum
## 1 0-5yrs 26 6 1 1 2 1 3
## 2 0-5yrs 42 1 1 1 0 2 1
## 3 0-5yrs 39 6 2 1 0 3 4
## 4 0-5yrs 34 4 2 1 0 4 2
## 5 6-11yrs 35 3 1 1 1 5 32
## 6 6-11yrs 36 4 2 1 1 6 36
The “case” variable indicates treatment (1) versus control (0) status. We’ll want to match upon “age”.
> table(infert$case)
##
## 0 1
## 165 83
> table(infert$education, infert$case)
##
## 0 1
## 0-5yrs 8 4
## 6-11yrs 80 40
## 12+ yrs 77 39
Due to the sample size, if we were to compute matches on the entire
data set, the fullmatch
call would generate a distance
matrix of size \(165\times 83 =
13,695\). However, if we were instead to compute a match within
each level of the “education” variable, we’d compute three different
distance matrices, of total size \(8\times 4 +
80\times 40 + 77\times 39 = 6,235\), a reduction of 55%.
We’ll do this by splitting the data within each match.
> f1 <- fullmatch(case ~ age, data = infert[infert$education == "0-5yrs", ])
> f2 <- fullmatch(case ~ age, data = infert[infert$education == "6-11yrs", ])
> f3 <- fullmatch(case ~ age, data = infert[infert$education == "12+ yrs", ])
> summary(f1)
## Structure of matched sets:
## 1:2
## 4
## Effective Sample Size: 5.3
## (equivalent number of matched pairs).
> summary(f2)
## Structure of matched sets:
## 1:1 1:2 1:3 1:4 1:5+
## 20 8 6 4 2
## Effective Sample Size: 49.4
## (equivalent number of matched pairs).
> summary(f3)
## Structure of matched sets:
## 1:1 1:2 1:3 1:4 1:5+
## 23 5 6 2 3
## Effective Sample Size: 47
## (equivalent number of matched pairs).
Some of the matched sets are quite large (1:5+) so let’s put some restrictions.
> f2 <- fullmatch(case ~ age, data = infert[infert$education == "6-11yrs", ],
+ max.controls = 4)
> f3 <- fullmatch(case ~ age, data = infert[infert$education == "12+ yrs", ],
+ max.controls = 4)
> summary(f2)
## Structure of matched sets:
## 1:1 1:2 1:3 1:4
## 18 10 6 6
## Effective Sample Size: 49.9
## (equivalent number of matched pairs).
> summary(f3)
## Structure of matched sets:
## 1:1 1:2 1:3 1:4
## 20 6 7 6
## Effective Sample Size: 48.1
## (equivalent number of matched pairs).
Now we simply combine the three matches.
> fcombine <- c(f1, f2, f3)
> summary(fcombine)
## Structure of matched sets:
## 1:1 1:2 1:3 1:4
## 38 20 13 12
## Effective Sample Size: 103.4
## (equivalent number of matched pairs).
> infert$match <- fcombine
within
argumentAn alternative approach would be using the within
argument and the exactMatch
function to define
subproblems.
> fwithin <- fullmatch(case ~ age, data = infert, max.controls = 4,
+ within = exactMatch(case ~ education, data = infert))
> summary(fwithin)
## Structure of matched sets:
## 1:1 1:2 1:3 1:4
## 38 20 13 12
## Effective Sample Size: 103.4
## (equivalent number of matched pairs).
Observe that we obtain equivalent matched structure. A few notes comparing the two approaches:
When using the within
argument, restrictions must be
the same across subproblems. That is, max.controls
,
min.controls
and omit.fraction
will be
equivalent. By running the subproblems separately, you can set different
restrictions per subproblem. E.g.,
> f1 <- fullmatch(z ~ x, data = d[d$group == 1, ], max.controls = 2)
> f2 <- fullmatch(z ~ x, data = d[d$group == 2, ], min.controls = 1/3)
> c(f1, f2)
While the matched structures will be equivalent between these two approaches (if the restrictions are the same across subproblems), the actual matched sets themselves may differ if you have observations of equal distance. In general this should not be considered a problem.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.