The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
In bulk epigenome/transcriptome experiments, molecular expression is measured in a tissue, which is a mixture of multiple types of cells. This package tests association of a disease/phenotype with a molecular marker for each cell type. The proportion of cell types in each sample needs to be given as input. The package is applicable to epigenome-wide association study (EWAS) and differential gene expression analysis. Takeuchi and Kato (submitted) "omicwas: cell-type-specific epigenome-wide and transcriptome association study".
Version: | 0.8.0 |
Depends: | R (≥ 3.6.0) |
Imports: | broom, data.table, dplyr, ff, glmnet, magrittr, MASS, matrixStats, parallel, purrr, rlang, tidyr |
Suggests: | testthat, knitr, rmarkdown |
Published: | 2020-10-08 |
DOI: | 10.32614/CRAN.package.omicwas |
Author: | Fumihiko Takeuchi |
Maintainer: | Fumihiko Takeuchi <fumihiko at takeuchi.name> |
BugReports: | https://github.com/fumi-github/omicwas/issues |
License: | GPL-3 |
URL: | https://github.com/fumi-github/omicwas |
NeedsCompilation: | no |
Materials: | README |
In views: | Omics |
CRAN checks: | omicwas results |
Reference manual: | omicwas.pdf |
Vignettes: |
Introduction to omicwas |
Package source: | omicwas_0.8.0.tar.gz |
Windows binaries: | r-devel: omicwas_0.8.0.zip, r-release: omicwas_0.8.0.zip, r-oldrel: omicwas_0.8.0.zip |
macOS binaries: | r-release (arm64): omicwas_0.8.0.tgz, r-oldrel (arm64): omicwas_0.8.0.tgz, r-release (x86_64): omicwas_0.8.0.tgz, r-oldrel (x86_64): omicwas_0.8.0.tgz |
Old sources: | omicwas archive |
Please use the canonical form https://CRAN.R-project.org/package=omicwas to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.