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Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of 'novel' germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.
Version: | 0.5.0 |
Depends: | R (≥ 2.10) |
Imports: | dplyr (≥ 0.8.3), ggplot2 (≥ 3.2.1), magrittr, tigger (≥ 0.4.0), alakazam (≥ 0.3.0), stringr (≥ 1.4.0), data.table, gridExtra (≥ 2.3), tidyr (≥ 1.0.0), stringdist (≥ 0.9.5.2), RColorBrewer (≥ 1.1-2), Biostrings (≥ 2.52.0), argparser (≥ 0.4), ComplexHeatmap, bookdown, scales |
Suggests: | knitr, rmarkdown |
Published: | 2023-03-09 |
DOI: | 10.32614/CRAN.package.ogrdbstats |
Author: | William Lees |
Maintainer: | William Lees <william at lees.org.uk> |
BugReports: | https://github.com/airr-community/ogrdbstats/issues |
License: | CC BY-SA 4.0 |
URL: | https://github.com/airr-community/ogrdbstats |
NeedsCompilation: | no |
Materials: | NEWS |
CRAN checks: | ogrdbstats results |
Reference manual: | ogrdbstats.pdf |
Vignettes: |
Using ogrdbstats |
Package source: | ogrdbstats_0.5.0.tar.gz |
Windows binaries: | r-devel: ogrdbstats_0.5.0.zip, r-release: ogrdbstats_0.5.0.zip, r-oldrel: ogrdbstats_0.5.0.zip |
macOS binaries: | r-release (arm64): ogrdbstats_0.5.0.tgz, r-oldrel (arm64): ogrdbstats_0.5.0.tgz, r-release (x86_64): ogrdbstats_0.5.0.tgz, r-oldrel (x86_64): ogrdbstats_0.5.0.tgz |
Please use the canonical form https://CRAN.R-project.org/package=ogrdbstats to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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