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ogrdbstats: Analysis of Adaptive Immune Receptor Repertoire Germ Line
Statistics
Multiple tools are now available for inferring the personalised
germ line set from an adaptive immune receptor repertoire.
Output from these tools is converted to
a single format and supplemented with rich data such as usage and
characterisation of 'novel' germ line alleles. This data can be
particularly useful when considering the validity of novel inferences. Use
of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.
| Version: |
0.5.0 |
| Depends: |
R (≥ 2.10) |
| Imports: |
dplyr (≥ 0.8.3), ggplot2 (≥ 3.2.1), magrittr, tigger (≥
0.4.0), alakazam (≥ 0.3.0), stringr (≥ 1.4.0), data.table, gridExtra (≥ 2.3), tidyr (≥ 1.0.0), stringdist (≥ 0.9.5.2), RColorBrewer (≥ 1.1-2), Biostrings (≥ 2.52.0), argparser (≥
0.4), ComplexHeatmap, bookdown, scales |
| Suggests: |
knitr, rmarkdown |
| Published: |
2023-03-09 |
| Author: |
William Lees 
[aut, cre] |
| Maintainer: |
William Lees <william at lees.org.uk> |
| BugReports: |
https://github.com/airr-community/ogrdbstats/issues |
| License: |
CC BY-SA 4.0 |
| URL: |
https://github.com/airr-community/ogrdbstats |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
ogrdbstats results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=ogrdbstats
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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