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Infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.4) |
| Imports: | doParallel, dplyr, foreach, GenomeInfoDb, GenomicRanges, glmnet, Matrix, parallel, rtracklayer, S4Vectors, stats, utils |
| Published: | 2026-02-09 |
| DOI: | 10.32614/CRAN.package.ocrRBBR (may not be active yet) |
| Author: | Seyed Amir Malekpour [aut, cre] |
| Maintainer: | Seyed Amir Malekpour <a.malekpour at ipm.ir> |
| License: | GPL-3 |
| URL: | https://github.com/CompBioIPM/ocrRBBR |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | ocrRBBR results |
| Reference manual: | ocrRBBR.html , ocrRBBR.pdf |
| Package source: | ocrRBBR_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): ocrRBBR_0.1.0.tgz, r-oldrel (arm64): ocrRBBR_0.1.0.tgz, r-release (x86_64): ocrRBBR_0.1.0.tgz, r-oldrel (x86_64): ocrRBBR_0.1.0.tgz |
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