The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

occumb: Site Occupancy Modeling for Environmental DNA Metabarcoding

Fits multispecies site occupancy models to environmental DNA metabarcoding data collected using spatially-replicated survey design. Model fitting results can be used to evaluate and compare the effectiveness of species detection to find an efficient survey design. Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>.

Version: 1.1.0
Depends: jagsUI, R (≥ 2.10)
Imports: stats, methods, graphics, checkmate, crayon, knitr
Suggests: rmarkdown, spelling, testthat (≥ 3.0.0)
Published: 2024-03-26
DOI: 10.32614/CRAN.package.occumb
Author: Keiichi Fukaya [aut, cre], Ken Kellner [cph] (summary method for occumbFit class)
Maintainer: Keiichi Fukaya <fukayak99 at gmail.com>
BugReports: https://github.com/fukayak/occumb/issues
License: GPL (≥ 3)
URL: https://fukayak.github.io/occumb/, https://github.com/fukayak/occumb
NeedsCompilation: no
SystemRequirements: JAGS (http://mcmc-jags.sourceforge.net)
Language: en-US
Materials: README NEWS
CRAN checks: occumb results

Documentation:

Reference manual: occumb.pdf
Vignettes: Model specification in occumb()
Introduction to occumb

Downloads:

Package source: occumb_1.1.0.tar.gz
Windows binaries: r-devel: occumb_1.1.0.zip, r-release: occumb_1.1.0.zip, r-oldrel: occumb_1.1.0.zip
macOS binaries: r-release (arm64): occumb_1.1.0.tgz, r-oldrel (arm64): occumb_1.1.0.tgz, r-release (x86_64): occumb_1.1.0.tgz, r-oldrel (x86_64): occumb_1.1.0.tgz
Old sources: occumb archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=occumb to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.