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Title: Allele Frequencies for 50 Forensic STR Markers
Version: 0.2.1
Description: Allele frequency databases for 50 forensic short tandem repeat (STR) markers, covering Norway and several broader regional populations: Europe, Africa, South America, West Asia, Middle Asia, and East Asia. Developed and maintained for use at the Department of Forensic Sciences, Oslo, Norway.
License: MIT + file LICENSE
URL: https://github.com/magnusdv/norSTR
BugReports: https://github.com/magnusdv/norSTR/issues
Depends: R (≥ 3.5)
Encoding: UTF-8
Language: en-GB
LazyData: true
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-05-01 19:30:14 UTC; magnu
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Repository: CRAN
Date/Publication: 2025-05-05 10:10:06 UTC

norSTR: Allele frequencies for 50 forensic STR markers

Description

Allele frequency databases for 50 forensic short tandem repeat (STR) markers, covering Norway and several broader regional populations: Europe, Africa, South America, West Asia, Middle Asia, and East Asia. Developed and maintained for use at the Department of Forensic Sciences, Oslo, Norway.

Author(s)

Maintainer: Magnus Dehli Vigeland m.d.vigeland@medisin.uio.no (ORCID)

See Also

Useful links:


African STR allele frequency database

Description

Allele frequencies for 50 forensic short tandem repeat (STR) markers covering the African population.

Usage

africaDB

Format

A list of 50 frequency vectors. Each vector is a numeric with sum 1, and uses the allele labels as names.

Source

Department of Forensic Sciences, Oslo University Hospital.

Examples


africaDB[1:2]

East Asian STR allele frequency database

Description

Allele frequencies for 50 forensic short tandem repeat (STR) markers covering the East Asian population.

Usage

eastAsiaDB

Format

A list of 50 frequency vectors. Each vector is a numeric with sum 1, and uses the allele labels as names.

Source

Department of Forensic Sciences, Oslo University Hospital.

Examples


eastAsiaDB[1:2]


European STR allele frequency database

Description

Allele frequencies for 50 forensic short tandem repeat (STR) markers covering the European population.

Usage

europeDB

Format

A list of 50 frequency vectors. Each vector is a numeric with sum 1, and uses the allele labels as names.

Source

Department of Forensic Sciences, Oslo University Hospital.

Examples


europeDB[1:2]


Built-in linkage map

Description

A map providing the genetic positions (in centiMorgans) of each STR marker featured in this package.

Usage

map50

Format

A data frame with 50 rows and 4 columns: Marker, Chr, cM, Kit.


Common STR marker sets

Description

Lists of autosomal STR markers included in widely-used commercial forensic kits. Sex-determining (e.g. Amelogenin) and non-autosomal markers (e.g. Y markers) are explicitly omitted.

Usage

markerSets

Format

A named list of 6 character vectors of marker names.

Details

Kits included:

Examples

markerSets$fusion6c


Mid Asian STR allele frequency database

Description

Allele frequencies for 50 forensic short tandem repeat (STR) markers covering the Mid Asian population.

Usage

midAsiaDB

Format

A list of 50 frequency vectors. Each vector is a numeric with sum 1, and uses the allele labels as names.

Source

Department of Forensic Sciences, Oslo University Hospital.

Examples


midAsiaDB[1:2]


Norwegian STR allele frequency database

Description

Allele frequencies for 50 forensic short tandem repeat (STR) markers covering the Norwegian population.

Usage

norwayDB

Format

A list of 50 frequency vectors. Each vector is a numeric with sum 1, and uses the allele labels as names.

Source

Department of Forensic Sciences, Oslo University Hospital.

Examples


norwayDB[1:2]


South American STR allele frequency database

Description

Allele frequencies for 50 forensic short tandem repeat (STR) markers covering the South American population.

Usage

southAmericaDB

Format

A list of 50 frequency vectors. Each vector is a numeric with sum 1, and uses the allele labels as names.

Source

Department of Forensic Sciences, Oslo University Hospital.

Examples


southAmericaDB[1:2]

West Asian STR allele frequency database

Description

Allele frequencies for 50 forensic short tandem repeat (STR) markers covering the West Asian population.

Usage

westAsiaDB

Format

A list of 50 frequency vectors. Each vector is a numeric with sum 1, and uses the allele labels as names.

Source

Department of Forensic Sciences, Oslo University Hospital.

Examples


westAsiaDB[1:2]

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